Work with Niko Popitsch | NotedSource
Senior Bioinformatician, University of Vienna
https://cv.notedsource.io/me/25RNG83L
Niko Popitsch
Senior Bioinformatician, University of Vienna
Research Expertise
Bioinformatics
Genetics (clinical)
Genetics
Molecular Biology
Cell Biology
Cancer Research
Oncology
Computer Networks and Communications
Software
Molecular Medicine
Biotechnology
Developmental Biology
Statistics and Probability
Modeling and Simulation
Legacy Map
Full ViewPublications
Faculty Opinions recommendation of Factors
influencing success of clinical genome
sequencing across a broad spectrum of
disorders.
Faculty Opinions – Post-Publication
Peer Review of the Biomedical
Literature
2015
The complete costs of genome sequencing: a
microcosting study in cancer and rare
diseases from a single center in the
United Kingdom
Genetics in Medicine
2020
Sequencing of human genomes with nanopore
technology
Nature Communications
2019
Clinical whole-genome sequencing from
routine formalin-fixed, paraffin-embedded
specimens: pilot study for the 100,000
Genomes Project
Genetics in Medicine
2018
The Borrelia burgdorferi RelA/SpoT Homolog
and Stringent Response Regulate Survival
in the Tick Vector and Global Gene
Expression during Starvation
PLOS Pathogens
2015
Revisiting the coding potential of theE. coligenome through Hfq co-immunoprecipitation
RNA Biology
2014
Mutations inPIGY: expanding the
phenotype of inherited
glycosylphosphatidylinositol deficiencies
Human Molecular Genetics
2015
Analysis of exome data for 4293 trios
suggests GPI-anchor biogenesis defects are
a rare cause of developmental disorders
European Journal of Human
Genetics
2017
Novel Clinically Relevant Genes in
Gastrointestinal Stromal Tumors Identified
by Exome Sequencing
Clinical Cancer Research
2013
NGC: lossless and lossy compression of
aligned high-throughput sequencing data
Nucleic Acids Research
2012
DSNotify
Proceedings of the 19th international
conference on World wide web
2010
In vivoexpression technology and 5′
end mapping of theBorrelia burgdorferitranscriptome identify novel RNAs
expressed during mammalian infection
Nucleic Acids Research
2016
DSNotify – A solution for event detection
and link maintenance in dynamic datasets
Journal of Web Semantics
2011
Germline recessive mutations in PI4KA are
associated with perisylvian
polymicrogyria, cerebellar hypoplasia and
arthrogryposis
Human Molecular Genetics
2015
Impaired plasticity of macrophages in
X-linked adrenoleukodystrophy
Brain
2018
Assessment of Pre-Analytical Sample
Handling Conditions for Comprehensive
Liquid Biopsy Analysis
The Journal of Molecular
Diagnostics
2020
Genomic and transcriptomic correlates of
Richter transformation in chronic
lymphocytic leukemia
Blood
2021
Temperature-dependent sRNA transcriptome
of the Lyme disease spirochete
BMC Genomics
2017
Natural RNA Polymerase Aptamers Regulate
Transcription in E. coli
Molecular Cell
2017
DSNotify - Detecting and Fixing Broken
Links in Linked Data Sets
2009 20th International Workshop on
Database and Expert Systems
Application
2009
Spectrum of gene mutations detected by
next generation exome sequencing in brain
metastases of lung adenocarcinoma
European Journal of Cancer
2015
CD371 cell surface expression: a unique
feature of DUX4-rearranged acute
lymphoblastic leukemia
Haematologica
2019
Next-Generation Sequencing-based genomic
profiling of brain metastases of primary
ovarian cancer identifies high number of
BRCA-mutations
Journal of Neuro-Oncology
2017
Hijacking of transcriptional condensates
by endogenous retroviruses
Nature Genetics
2022
Targeted Next-Generation Sequencing of
Plasma DNA from Cancer Patients: Factors
Influencing Consistency with Tumour DNA
and Prospective Investigation of Its
Utility for Diagnosis
PLOS ONE
2016
Interweaving OAI-PMH data sources with the
linked data cloud
International Journal of Metadata,
Semantics and Ontologies
2010
A-to-I RNA Editing Uncovers Hidden Signals
of Adaptive Genome Evolution in Animals
Genome Biology and Evolution
2020
An inhibitor of complement C5 provides
structural insights into activation
Proceedings of the National Academy of
Sciences
2019
Clinically actionable mutation profiles in
patients with cancer identified by
whole-genome sequencing
Molecular Case Studies
2018
Supporting meetings with a goal-driven
service-oriented multimedia environment
Proceedings of the first ACM
international workshop on Multimedia
service composition
2005
METIS: a flexible foundation for the
unified management of multimedia assets
Multimedia Tools and Applications
2007
METIS
Proceedings of the 12th annual ACM
international conference on
Multimedia
2004
Shep interacts with posttranscriptional
regulators to control dendrite
morphogenesis in sensory neurons
Developmental Biology
2018
Whole-genome sequencing identifies
homozygous BRCA2 deletion guiding
treatment in dedifferentiated prostate
cancer
Molecular Case Studies
2017
ReliableGenome: annotation of genomic
regions with high/low variant calling
concordance
Bioinformatics
2016
Performance optimization of the ORION
peer-to-peer file sharing protocol for
mobile Ad Hoc networks using unicast
messaging
Unknown Venue
CODOC: efficient access, analysis and
compression of depth of coverage signals
Bioinformatics
2014
Targeting foam cell formation in
inflammatory brain diseases by the histone
modifier MS‐275
Annals of Clinical and Translational
Neurology
2020
GREEN-DB: a framework for the annotation
and prioritization of non-coding
regulatory variants from whole-genome
sequencing data
Nucleic Acids Research
2022
iPres 2016: 13th International Conference
on Digital Preservation, Bern, Switzerland
Preservation, Digital Technology &
Culture
2017
DeepSNP: An End-to-End Deep Neural Network
with Attention-Based Localization for
Breakpoint Detection in Single-Nucleotide
Polymorphism Array Genomic Data
Journal of Computational Biology
2019
VARAN-GIE: curation of genomic interval
sets
Bioinformatics
2018
Identifying High-Risk CLL to Predict Early
Relapse after FCR Based Treatment Using
Whole Genome Sequencing: First Results
from the Genomics England CLL Pilot
Blood
2016
Keep your triples together
Proceedings of the 7th International
Conference on Semantic Systems
2011
An Evaluation Approach for Dynamics-Aware
Applications Using Linked Data
2010 Workshops on Database and Expert
Systems Applications
2010
Nanopanel2 calls phased low-frequency
variants in Nanopore panel sequencing data
Bioinformatics
2021
PF376 DIFFERENTIAL GENOMIC AND
TRANSCRIPTOMIC EVENTS ASSOCIATED WITH
HIGH-GRADE TRANSFORMATION OF CHRONIC
LYMPHOCYTIC LEUKEMIA
HemaSphere
2019
Correction: The Borrelia burgdorferi
RelA/SpoT Homolog and Stringent Response
Regulate Survival in the Tick Vector and
Global Gene Expression during Starvation
PLOS Pathogens
2015
The MEKETREpository - Middle Kingdom Tomb
and Artwork Descriptions on the Web
Research and Advanced Technology for
Digital Libraries
2011
Technologies for Semantic Project-Driven
Work Environments
Emerging Technologies for Semantic Work
Environments
2008
mRNA stability and m6A are major
determinants of subcellular mRNA
localization in neurons
Molecular Cell
2023
The identification of protein and RNA
interactors of the splicing factor Caper
in the adult Drosophila nervous system
Frontiers in Molecular
Neuroscience
2023
GREEN-DB: A framework for the annotation
and prioritization of non-coding
regulatory variants from whole-genome
sequencing data
Unknown Venue
2020
Deep SNP: An End-to-end Deep Neural
Network with Attention-based Localization
for Break-point Detection in SNP Array
Genomic data
Unknown Venue
2018
Transcriptome-Wide Profiling of RNA
Stability
Methods in Molecular Biology
2021
Abstract B28: A cross-species enhancer
activity analysis approach to identify the
Ewing sarcoma cell of origin
Cancer Research
2020
A novel inhibitor of complement C5
provides structural insights into
activation
Unknown Venue
2019
Identifikation einer Heterozygoten
RIT1-Mutation in einem fetalen Fall von
Noonan Syndrom mit gonadoblastoider,
testiculärer Dysplasie mittels
Exom-Sequenzierung
Geburtshilfe und Frauenheilkunde
2015
Warren, Prof. Graham Barry, (born 25 Feb.
1948), Scientific Director, Max F. Perutz
Laboratories, Vienna, 2007–17, now
Professor Emeritus, University and Medical
University of Vienna
Who's Who
2007
WebS 2012 Workshop Committee
2012 23rd International Workshop on
Database and Expert Systems
Applications
2012
Dynamically Generated Scalable Vector
Graphics (SVG) for Barrier-Free
Web-Applications
Lecture Notes in Computer Science
2006
DISCLOSURE OF FUNDING ARRANGEMENTS
Disclosure of the funding arrangement
Civil Procedure
2012
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