Niko Popitsch
Senior Bioinformatician, University of Vienna
Research Expertise
Publications
Faculty Opinions recommendation of Factors influencing success of clinical genome sequencing across a broad spectrum of disorders.
Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature / May 30, 2015
Robinson, P. (2015). Faculty Opinions recommendation of Factors influencing success of clinical genome sequencing across a broad spectrum of disorders. Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature. https://doi.org/10.3410/f.725503562.793507065
The complete costs of genome sequencing: a microcosting study in cancer and rare diseases from a single center in the United Kingdom
Genetics in Medicine / Jan 01, 2020
Schwarze, K., Buchanan, J., Fermont, J. M., Dreau, H., Tilley, M. W., Taylor, J. M., Antoniou, P., Knight, S. J. L., Camps, C., Pentony, M. M., Kvikstad, E. M., Harris, S., Popitsch, N., Pagnamenta, A. T., Schuh, A., Taylor, J. C., & Wordsworth, S. (2020). The complete costs of genome sequencing: a microcosting study in cancer and rare diseases from a single center in the United Kingdom. Genetics in Medicine, 22(1), 85–94. https://doi.org/10.1038/s41436-019-0618-7
Sequencing of human genomes with nanopore technology
Nature Communications / Apr 23, 2019
Bowden, R., Davies, R. W., Heger, A., Pagnamenta, A. T., de Cesare, M., Oikkonen, L. E., Parkes, D., Freeman, C., Dhalla, F., Patel, S. Y., Popitsch, N., Ip, C. L. C., Roberts, H. E., Salatino, S., Lockstone, H., Lunter, G., Taylor, J. C., Buck, D., Simpson, M. A., & Donnelly, P. (2019). Sequencing of human genomes with nanopore technology. Nature Communications, 10(1). https://doi.org/10.1038/s41467-019-09637-5
Clinical whole-genome sequencing from routine formalin-fixed, paraffin-embedded specimens: pilot study for the 100,000 Genomes Project
Genetics in Medicine / Oct 01, 2018
Robbe, P., Popitsch, N., Knight, S. J. L., Antoniou, P., Becq, J., He, M., Kanapin, A., Samsonova, A., Vavoulis, D. V., Ross, M. T., Kingsbury, Z., Cabes, M., Ramos, S. D. C., Page, S., Dreau, H., Ridout, K., Jones, L. J., Tuff-Lacey, A., Henderson, S., … Schuh, A. (2018). Clinical whole-genome sequencing from routine formalin-fixed, paraffin-embedded specimens: pilot study for the 100,000 Genomes Project. Genetics in Medicine, 20(10), 1196–1205. https://doi.org/10.1038/gim.2017.241
The Borrelia burgdorferi RelA/SpoT Homolog and Stringent Response Regulate Survival in the Tick Vector and Global Gene Expression during Starvation
PLOS Pathogens / Sep 15, 2015
Drecktrah, D., Lybecker, M., Popitsch, N., Rescheneder, P., Hall, L. S., & Samuels, D. S. (2015). The Borrelia burgdorferi RelA/SpoT Homolog and Stringent Response Regulate Survival in the Tick Vector and Global Gene Expression during Starvation. PLOS Pathogens, 11(9), e1005160. https://doi.org/10.1371/journal.ppat.1005160
Revisiting the coding potential of theE. coligenome through Hfq co-immunoprecipitation
RNA Biology / May 01, 2014
Bilusic, I., Popitsch, N., Rescheneder, P., Schroeder, R., & Lybecker, M. (2014). Revisiting the coding potential of theE. coligenome through Hfq co-immunoprecipitation. RNA Biology, 11(5), 641–654. https://doi.org/10.4161/rna.29299
Mutations inPIGY: expanding the phenotype of inherited glycosylphosphatidylinositol deficiencies
Human Molecular Genetics / Aug 20, 2015
Ilkovski, B., Pagnamenta, A. T., O’Grady, G. L., Kinoshita, T., Howard, M. F., Lek, M., Thomas, B., Turner, A., Christodoulou, J., Sillence, D., Knight, S. J. L., Popitsch, N., Keays, D. A., Anzilotti, C., Goriely, A., Waddell, L. B., Brilot, F., North, K. N., Kanzawa, N., … Clarke, N. F. (2015). Mutations inPIGY: expanding the phenotype of inherited glycosylphosphatidylinositol deficiencies. Human Molecular Genetics, 24(21), 6146–6159. https://doi.org/10.1093/hmg/ddv331
Analysis of exome data for 4293 trios suggests GPI-anchor biogenesis defects are a rare cause of developmental disorders
European Journal of Human Genetics / Mar 22, 2017
Pagnamenta, A. T., Murakami, Y., Taylor, J. M., Anzilotti, C., Howard, M. F., Miller, V., Johnson, D. S., Tadros, S., Mansour, S., Temple, I. K., Firth, R., Rosser, E., Harrison, R. E., Kerr, B., Popitsch, N., Kinoshita, T., Taylor, J. C., & Kini, U. (2017). Analysis of exome data for 4293 trios suggests GPI-anchor biogenesis defects are a rare cause of developmental disorders. European Journal of Human Genetics, 25(6), 669–679. https://doi.org/10.1038/ejhg.2017.32
Novel Clinically Relevant Genes in Gastrointestinal Stromal Tumors Identified by Exome Sequencing
Clinical Cancer Research / Oct 01, 2013
Schoppmann, S. F., Vinatzer, U., Popitsch, N., Mittlböck, M., Liebmann-Reindl, S., Jomrich, G., Streubel, B., & Birner, P. (2013). Novel Clinically Relevant Genes in Gastrointestinal Stromal Tumors Identified by Exome Sequencing. Clinical Cancer Research, 19(19), 5329–5339. https://doi.org/10.1158/1078-0432.ccr-12-3863
NGC: lossless and lossy compression of aligned high-throughput sequencing data
Nucleic Acids Research / Oct 12, 2012
Popitsch, N., & von Haeseler, A. (2012). NGC: lossless and lossy compression of aligned high-throughput sequencing data. Nucleic Acids Research, 41(1), e27–e27. https://doi.org/10.1093/nar/gks939
DSNotify
Proceedings of the 19th international conference on World wide web / Apr 26, 2010
Popitsch, N. P., & Haslhofer, B. (2010). DSNotify. Proceedings of the 19th International Conference on World Wide Web. https://doi.org/10.1145/1772690.1772768
In vivoexpression technology and 5′ end mapping of theBorrelia burgdorferitranscriptome identify novel RNAs expressed during mammalian infection
Nucleic Acids Research / Dec 01, 2016
Adams, P. P., Flores Avile, C., Popitsch, N., Bilusic, I., Schroeder, R., Lybecker, M., & Jewett, M. W. (2016). In vivoexpression technology and 5′ end mapping of theBorrelia burgdorferitranscriptome identify novel RNAs expressed during mammalian infection. Nucleic Acids Research, 45(2), 775–792. https://doi.org/10.1093/nar/gkw1180
DSNotify – A solution for event detection and link maintenance in dynamic datasets
Journal of Web Semantics / Sep 01, 2011
Popitsch, N., & Haslhofer, B. (2011). DSNotify – A solution for event detection and link maintenance in dynamic datasets. Journal of Web Semantics, 9(3), 266–283. https://doi.org/10.1016/j.websem.2011.05.002
Germline recessive mutations in PI4KA are associated with perisylvian polymicrogyria, cerebellar hypoplasia and arthrogryposis
Human Molecular Genetics / Apr 08, 2015
Pagnamenta, A. T., Howard, M. F., Wisniewski, E., Popitsch, N., Knight, S. J. L., Keays, D. A., Quaghebeur, G., Cox, H., Cox, P., Balla, T., Taylor, J. C., & Kini, U. (2015). Germline recessive mutations in PI4KA are associated with perisylvian polymicrogyria, cerebellar hypoplasia and arthrogryposis. Human Molecular Genetics, 24(13), 3732–3741. https://doi.org/10.1093/hmg/ddv117
Impaired plasticity of macrophages in X-linked adrenoleukodystrophy
Brain / May 30, 2018
Weinhofer, I., Zierfuss, B., Hametner, S., Wagner, M., Popitsch, N., Machacek, C., Bartolini, B., Zlabinger, G., Ohradanova-Repic, A., Stockinger, H., Köhler, W., Höftberger, R., Regelsberger, G., Forss-Petter, S., Lassmann, H., & Berger, J. (2018). Impaired plasticity of macrophages in X-linked adrenoleukodystrophy. Brain, 141(8), 2329–2342. https://doi.org/10.1093/brain/awy127
Assessment of Pre-Analytical Sample Handling Conditions for Comprehensive Liquid Biopsy Analysis
The Journal of Molecular Diagnostics / Aug 01, 2020
Gerber, T., Taschner-Mandl, S., Saloberger-Sindhöringer, L., Popitsch, N., Heitzer, E., Witt, V., Geyeregger, R., Hutter, C., Schwentner, R., Ambros, I. M., & Ambros, P. F. (2020). Assessment of Pre-Analytical Sample Handling Conditions for Comprehensive Liquid Biopsy Analysis. The Journal of Molecular Diagnostics, 22(8), 1070–1086. https://doi.org/10.1016/j.jmoldx.2020.05.006
Genomic and transcriptomic correlates of Richter transformation in chronic lymphocytic leukemia
Blood / May 20, 2021
Klintman, J., Appleby, N., Stamatopoulos, B., Ridout, K., Eyre, T. A., Robbe, P., Pascua, L. L., Knight, S. J. L., Dreau, H., Cabes, M., Popitsch, N., Ehinger, M., Martín-Subero, J. I., Campo, E., Månsson, R., Rossi, D., Taylor, J. C., Vavoulis, D. V., & Schuh, A. (2021). Genomic and transcriptomic correlates of Richter transformation in chronic lymphocytic leukemia. Blood, 137(20), 2800–2816. https://doi.org/10.1182/blood.2020005650
Temperature-dependent sRNA transcriptome of the Lyme disease spirochete
BMC Genomics / Jan 05, 2017
Popitsch, N., Bilusic, I., Rescheneder, P., Schroeder, R., & Lybecker, M. (2017). Temperature-dependent sRNA transcriptome of the Lyme disease spirochete. BMC Genomics, 18(1). https://doi.org/10.1186/s12864-016-3398-3
Natural RNA Polymerase Aptamers Regulate Transcription in E. coli
Molecular Cell / Jul 01, 2017
Sedlyarova, N., Rescheneder, P., Magán, A., Popitsch, N., Rziha, N., Bilusic, I., Epshtein, V., Zimmermann, B., Lybecker, M., Sedlyarov, V., Schroeder, R., & Nudler, E. (2017). Natural RNA Polymerase Aptamers Regulate Transcription in E. coli. Molecular Cell, 67(1), 30-43.e6. https://doi.org/10.1016/j.molcel.2017.05.025
DSNotify - Detecting and Fixing Broken Links in Linked Data Sets
2009 20th International Workshop on Database and Expert Systems Application / Jan 01, 2009
Haslhofer, B., & Popitsch, N. (2009). DSNotify - Detecting and Fixing Broken Links in Linked Data Sets. 2009 20th International Workshop on Database and Expert Systems Application. https://doi.org/10.1109/dexa.2009.13
Spectrum of gene mutations detected by next generation exome sequencing in brain metastases of lung adenocarcinoma
European Journal of Cancer / Sep 01, 2015
Preusser, M., Berghoff, A. S., Koller, R., Zielinski, C. C., Hainfellner, J. A., Liebmann-Reindl, S., Popitsch, N., Geier, C. B., Streubel, B., & Birner, P. (2015). Spectrum of gene mutations detected by next generation exome sequencing in brain metastases of lung adenocarcinoma. European Journal of Cancer, 51(13), 1803–1811. https://doi.org/10.1016/j.ejca.2015.06.107
CD371 cell surface expression: a unique feature of DUX4-rearranged acute lymphoblastic leukemia
Haematologica / Jan 31, 2019
Schinnerl, D., Mejstrikova, E., Schumich, A., Zaliova, M., Fortschegger, K., Nebral, K., Attarbaschi, A., Fiser, K., Kauer, M. O., Popitsch, N., Haslinger, S., Inthal, A., Buldini, B., Basso, G., Bourquin, J.-P., Gaipa, G., Brüggemann, M., Feuerstein, T., Maurer-Granofszky, M., … Strehl, S. (2019). CD371 cell surface expression: a unique feature of DUX4-rearranged acute lymphoblastic leukemia. Haematologica, 104(8), e352–e355. https://doi.org/10.3324/haematol.2018.214353
Next-Generation Sequencing-based genomic profiling of brain metastases of primary ovarian cancer identifies high number of BRCA-mutations
Journal of Neuro-Oncology / May 11, 2017
Balendran, S., Liebmann-Reindl, S., Berghoff, A. S., Reischer, T., Popitsch, N., Geier, C. B., Kenner, L., Birner, P., Streubel, B., & Preusser, M. (2017). Next-Generation Sequencing-based genomic profiling of brain metastases of primary ovarian cancer identifies high number of BRCA-mutations. Journal of Neuro-Oncology, 133(3), 469–476. https://doi.org/10.1007/s11060-017-2459-z
Hijacking of transcriptional condensates by endogenous retroviruses
Nature Genetics / Jul 21, 2022
Asimi, V., Sampath Kumar, A., Niskanen, H., Riemenschneider, C., Hetzel, S., Naderi, J., Fasching, N., Popitsch, N., Du, M., Kretzmer, H., Smith, Z. D., Weigert, R., Walther, M., Mamde, S., Meierhofer, D., Wittler, L., Buschow, R., Timmermann, B., Cisse, I. I., … Hnisz, D. (2022). Hijacking of transcriptional condensates by endogenous retroviruses. Nature Genetics, 54(8), 1238–1247. https://doi.org/10.1038/s41588-022-01132-w
Targeted Next-Generation Sequencing of Plasma DNA from Cancer Patients: Factors Influencing Consistency with Tumour DNA and Prospective Investigation of Its Utility for Diagnosis
PLOS ONE / Sep 14, 2016
Kaisaki, P. J., Cutts, A., Popitsch, N., Camps, C., Pentony, M. M., Wilson, G., Page, S., Kaur, K., Vavoulis, D., Henderson, S., Gupta, A., Middleton, M. R., Karydis, I., Talbot, D. C., Schuh, A., & Taylor, J. C. (2016). Targeted Next-Generation Sequencing of Plasma DNA from Cancer Patients: Factors Influencing Consistency with Tumour DNA and Prospective Investigation of Its Utility for Diagnosis. PLOS ONE, 11(9), e0162809. https://doi.org/10.1371/journal.pone.0162809
Interweaving OAI-PMH data sources with the linked data cloud
International Journal of Metadata, Semantics and Ontologies / Jan 01, 2010
Haslhofer, B., & Schandl, B. (2010). Interweaving OAI-PMH data sources with the linked data cloud. International Journal of Metadata, Semantics and Ontologies, 5(1), 17. https://doi.org/10.1504/ijmso.2010.032648
A-to-I RNA Editing Uncovers Hidden Signals of Adaptive Genome Evolution in Animals
Genome Biology and Evolution / Mar 07, 2020
Popitsch, N., Huber, C. D., Buchumenski, I., Eisenberg, E., Jantsch, M., von Haeseler, A., & Gallach, M. (2020). A-to-I RNA Editing Uncovers Hidden Signals of Adaptive Genome Evolution in Animals. Genome Biology and Evolution, 12(4), 345–357. https://doi.org/10.1093/gbe/evaa046
An inhibitor of complement C5 provides structural insights into activation
Proceedings of the National Academy of Sciences / Dec 23, 2019
Reichhardt, M. P., Johnson, S., Tang, T., Morgan, T., Tebeka, N., Popitsch, N., Deme, J. C., Jore, M. M., & Lea, S. M. (2019). An inhibitor of complement C5 provides structural insights into activation. Proceedings of the National Academy of Sciences, 117(1), 362–370. https://doi.org/10.1073/pnas.1909973116
Clinically actionable mutation profiles in patients with cancer identified by whole-genome sequencing
Molecular Case Studies / Apr 01, 2018
Schuh, A., Dreau, H., Knight, S. J. L., Ridout, K., Mizani, T., Vavoulis, D., Colling, R., Antoniou, P., Kvikstad, E. M., Pentony, M. M., Hamblin, A., Protheroe, A., Parton, M., Shah, K. A., Orosz, Z., Athanasou, N., Hassan, B., Flanagan, A. M., Ahmed, A., … Taylor, J. C. (2018). Clinically actionable mutation profiles in patients with cancer identified by whole-genome sequencing. Molecular Case Studies, 4(2), a002279. https://doi.org/10.1101/mcs.a002279
Supporting meetings with a goal-driven service-oriented multimedia environment
Proceedings of the first ACM international workshop on Multimedia service composition / Nov 11, 2005
Hummel, K. A., Jochum, W., Leitich, S., & Schandl, B. (2005). Supporting meetings with a goal-driven service-oriented multimedia environment. Proceedings of the First ACM International Workshop on Multimedia Service Composition. https://doi.org/10.1145/1099423.1099434
METIS: a flexible foundation for the unified management of multimedia assets
Multimedia Tools and Applications / Feb 16, 2007
King, R., Popitsch, N., & Westermann, U. (2007). METIS: a flexible foundation for the unified management of multimedia assets. Multimedia Tools and Applications, 33(3), 325–349. https://doi.org/10.1007/s11042-007-0101-3
METIS
Proceedings of the 12th annual ACM international conference on Multimedia / Oct 10, 2004
King, R., Popitsch, N., & Westermann, U. (2004). METIS. Proceedings of the 12th Annual ACM International Conference on Multimedia. https://doi.org/10.1145/1027527.1027695
Shep interacts with posttranscriptional regulators to control dendrite morphogenesis in sensory neurons
Developmental Biology / Dec 01, 2018
Olesnicky, E. C., Antonacci, S., Popitsch, N., Lybecker, M. C., Titus, M. B., Valadez, R., Derkach, P. G., Marean, A., Miller, K., Mathai, S. K., & Killian, D. J. (2018). Shep interacts with posttranscriptional regulators to control dendrite morphogenesis in sensory neurons. Developmental Biology, 444(2), 116–128. https://doi.org/10.1016/j.ydbio.2018.09.022
Whole-genome sequencing identifies homozygous BRCA2 deletion guiding treatment in dedifferentiated prostate cancer
Molecular Case Studies / Mar 09, 2017
Purshouse, K., Schuh, A., Fairfax, B. P., Knight, S., Antoniou, P., Dreau, H., Popitsch, N., Gatter, K., Roberts, I., Browning, L., Traill, Z., Kerr, D., Verrill, C., Tuthill, M., Taylor, J. C., & Protheroe, A. (2017). Whole-genome sequencing identifies homozygous BRCA2 deletion guiding treatment in dedifferentiated prostate cancer. Molecular Case Studies, 3(3), a001362. https://doi.org/10.1101/mcs.a001362
ReliableGenome: annotation of genomic regions with high/low variant calling concordance
Bioinformatics / Sep 07, 2016
Popitsch, N., Schuh, A., & Taylor, J. C. (2016). ReliableGenome: annotation of genomic regions with high/low variant calling concordance. Bioinformatics, 33(2), 155–160. https://doi.org/10.1093/bioinformatics/btw587
Performance optimization of the ORION peer-to-peer file sharing protocol for mobile Ad Hoc networks using unicast messaging
Abada, A. (n.d.). Performance optimization of the ORION peer-to-peer file sharing protocol for mobile Ad Hoc networks using unicast messaging. https://doi.org/10.22215/etd/2006-08159
CODOC: efficient access, analysis and compression of depth of coverage signals
Bioinformatics / May 28, 2014
Popitsch, N. (2014). CODOC: efficient access, analysis and compression of depth of coverage signals. Bioinformatics, 30(18), 2676–2677. https://doi.org/10.1093/bioinformatics/btu362
Targeting foam cell formation in inflammatory brain diseases by the histone modifier MS‐275
Annals of Clinical and Translational Neurology / Sep 30, 2020
Zierfuss, B., Weinhofer, I., Buda, A., Popitsch, N., Hess, L., Moos, V., Hametner, S., Kemp, S., Köhler, W., Forss‐Petter, S., Seiser, C., & Berger, J. (2020). Targeting foam cell formation in inflammatory brain diseases by the histone modifier MS‐275. Annals of Clinical and Translational Neurology, 7(11), 2161–2177. Portico. https://doi.org/10.1002/acn3.51200
GREEN-DB: a framework for the annotation and prioritization of non-coding regulatory variants from whole-genome sequencing data
Nucleic Acids Research / Mar 02, 2022
Giacopuzzi, E., Popitsch, N., & Taylor, J. C. (2022). GREEN-DB: a framework for the annotation and prioritization of non-coding regulatory variants from whole-genome sequencing data. Nucleic Acids Research, 50(5), 2522–2535. https://doi.org/10.1093/nar/gkac130
iPres 2016: 13th International Conference on Digital Preservation, Bern, Switzerland
Preservation, Digital Technology & Culture / Feb 03, 2017
iPres 2016: 13th International Conference on Digital Preservation, Bern, Switzerland. (2017). Preservation, Digital Technology & Culture, 45(4), 196–200. https://doi.org/10.1515/pdtc-2016-2222
DeepSNP: An End-to-End Deep Neural Network with Attention-Based Localization for Breakpoint Detection in Single-Nucleotide Polymorphism Array Genomic Data
Journal of Computational Biology / Jun 01, 2019
Eghbal-Zadeh, H., Fischer, L., Popitsch, N., Kromp, F., Taschner-Mandl, S., Gerber, T., Bozsaky, E., Ambros, P. F., Ambros, I. M., Widmer, G., & Moser, B. A. (2019). DeepSNP: An End-to-End Deep Neural Network with Attention-Based Localization for Breakpoint Detection in Single-Nucleotide Polymorphism Array Genomic Data. Journal of Computational Biology, 26(6), 572–596. https://doi.org/10.1089/cmb.2018.0172
VARAN-GIE: curation of genomic interval sets
Bioinformatics / Aug 21, 2018
Popitsch, N. (2018). VARAN-GIE: curation of genomic interval sets. Bioinformatics, 35(5), 868–870. https://doi.org/10.1093/bioinformatics/bty723
Identifying High-Risk CLL to Predict Early Relapse after FCR Based Treatment Using Whole Genome Sequencing: First Results from the Genomics England CLL Pilot
Blood / Dec 02, 2016
Robbe, P., Ridout, K., Becq, J., He, M., Clifford, R., Alsolami, R., Burns, A., Knight, S. J., Oates, M., Howard, D., Pettitt, A. R., Rendon, A., Popitsch, N., Hillmen, P., Taylor, J. C., Caulfield, M., Bentley, D., Turnbull, C., & Schuh, A. (2016). Identifying High-Risk CLL to Predict Early Relapse after FCR Based Treatment Using Whole Genome Sequencing: First Results from the Genomics England CLL Pilot. Blood, 128(22), 2022–2022. https://doi.org/10.1182/blood.v128.22.2022.2022
Keep your triples together
Proceedings of the 7th International Conference on Semantic Systems / Sep 07, 2011
Popitsch, N. (2011). Keep your triples together. Proceedings of the 7th International Conference on Semantic Systems. https://doi.org/10.1145/2063518.2063524
An Evaluation Approach for Dynamics-Aware Applications Using Linked Data
2010 Workshops on Database and Expert Systems Applications / Aug 01, 2010
Popitsch, N., Haslhofer, B., & Roochi, E. M. (2010). An Evaluation Approach for Dynamics-Aware Applications Using Linked Data. 2010 Workshops on Database and Expert Systems Applications. https://doi.org/10.1109/dexa.2010.52
Nanopanel2 calls phased low-frequency variants in Nanopore panel sequencing data
Bioinformatics / Jul 16, 2021
Popitsch, N., Preuner, S., & Lion, T. (2021). Nanopanel2 calls phased low-frequency variants in Nanopore panel sequencing data. Bioinformatics, 37(24), 4620–4625. https://doi.org/10.1093/bioinformatics/btab526
PF376 DIFFERENTIAL GENOMIC AND TRANSCRIPTOMIC EVENTS ASSOCIATED WITH HIGH-GRADE TRANSFORMATION OF CHRONIC LYMPHOCYTIC LEUKEMIA
HemaSphere / Jun 01, 2019
Klintman, J., Stamatopoulos, B., Ridout, K., Eyre, T. A., Lopez Pascua, L., Appleby, N., Knight, S., Dreau, H., Ehinger, M., Martín-Subero, J. I., Campo, E., Mansson, R., Rossi, D., Taylor, J., Vavoulis, D. V., & Schuh, A. (2019). PF376 DIFFERENTIAL GENOMIC AND TRANSCRIPTOMIC EVENTS ASSOCIATED WITH HIGH-GRADE TRANSFORMATION OF CHRONIC LYMPHOCYTIC LEUKEMIA. HemaSphere, 3(S1), 139–140. https://doi.org/10.1097/01.hs9.0000559716.92296.c9
Correction: The Borrelia burgdorferi RelA/SpoT Homolog and Stringent Response Regulate Survival in the Tick Vector and Global Gene Expression during Starvation
PLOS Pathogens / Oct 16, 2015
Drecktrah, D., Lybecker, M., Popitsch, N., Rescheneder, P., Hall, L. S., & Samuels, D. S. (2015). Correction: The Borrelia burgdorferi RelA/SpoT Homolog and Stringent Response Regulate Survival in the Tick Vector and Global Gene Expression during Starvation. PLOS Pathogens, 11(10), e1005242. https://doi.org/10.1371/journal.ppat.1005242
The MEKETREpository - Middle Kingdom Tomb and Artwork Descriptions on the Web
Research and Advanced Technology for Digital Libraries / Jan 01, 2011
Mader, C., Haslhofer, B., & Popitsch, N. (2011). The MEKETREpository - Middle Kingdom Tomb and Artwork Descriptions on the Web. Lecture Notes in Computer Science, 449–452. https://doi.org/10.1007/978-3-642-24469-8_47
Technologies for Semantic Project-Driven Work Environments
Emerging Technologies for Semantic Work Environments / Jan 01, 2008
Schandl, B., King, R., Popitsch, N., Rauter, B., & Povazay, M. (2008). Technologies for Semantic Project-Driven Work Environments. Emerging Technologies for Semantic Work Environments, 245–261. https://doi.org/10.4018/978-1-59904-877-2.ch014
mRNA stability and m6A are major determinants of subcellular mRNA localization in neurons
Molecular Cell / Aug 01, 2023
Loedige, I., Baranovskii, A., Mendonsa, S., Dantsuji, S., Popitsch, N., Breimann, L., Zerna, N., Cherepanov, V., Milek, M., Ameres, S., & Chekulaeva, M. (2023). mRNA stability and m6A are major determinants of subcellular mRNA localization in neurons. Molecular Cell, 83(15), 2709-2725.e10. https://doi.org/10.1016/j.molcel.2023.06.021
The identification of protein and RNA interactors of the splicing factor Caper in the adult Drosophila nervous system
Frontiers in Molecular Neuroscience / Jun 23, 2023
Titus, M. B., Chang, A. W., Popitsch, N., Ebmeier, C. C., Bono, J. M., & Olesnicky, E. C. (2023). The identification of protein and RNA interactors of the splicing factor Caper in the adult Drosophila nervous system. Frontiers in Molecular Neuroscience, 16. https://doi.org/10.3389/fnmol.2023.1114857
GREEN-DB: A framework for the annotation and prioritization of non-coding regulatory variants from whole-genome sequencing data
Sep 19, 2020
Giacopuzzi, E., Popitsch, N., & Taylor, J. (2020). GREEN-DB: A framework for the annotation and prioritization of non-coding regulatory variants from whole-genome sequencing data. https://doi.org/10.1101/2020.09.17.301960
Deep SNP: An End-to-end Deep Neural Network with Attention-based Localization for Break-point Detection in SNP Array Genomic data
Jun 24, 2018
Eghbal-zadeh, H., Fischer, L., Popitsch, N., Kromp, F., Taschner-Mandl, S., Koutini, K., Gerber, T., Bozsaky, E., Ambros, P. F., Ambros, I. M., Widmer, G., & Moser, B. A. (2018). Deep SNP: An End-to-end Deep Neural Network with Attention-based Localization for Break-point Detection in SNP Array Genomic data. https://doi.org/10.1101/354423
Transcriptome-Wide Profiling of RNA Stability
Methods in Molecular Biology / Oct 26, 2021
Fasching, N., Petržílek, J., Popitsch, N., Herzog, V. A., & Ameres, S. L. (2021). Transcriptome-Wide Profiling of RNA Stability. Post-Transcriptional Gene Regulation, 311–330. https://doi.org/10.1007/978-1-0716-1851-6_17
Abstract B28: A cross-species enhancer activity analysis approach to identify the Ewing sarcoma cell of origin
Cancer Research / Jul 15, 2020
Grissenberger, S., Poetsch, A., Heinzl, M., Morelli, L., Sheffield, N., Popitsch, N., Kovar, H., & Distel, M. (2020). Abstract B28: A cross-species enhancer activity analysis approach to identify the Ewing sarcoma cell of origin. Cancer Research, 80(14_Supplement), B28–B28. https://doi.org/10.1158/1538-7445.pedca19-b28
A novel inhibitor of complement C5 provides structural insights into activation
May 23, 2019
Reichhardt, M. P., Johnson, S., Tang, T., Morgan, T., Tebeka, N., Popitsch, N., Deme, J. C., Jore, M. M., & Lea, S. M. (2019). A novel inhibitor of complement C5 provides structural insights into activation. https://doi.org/10.1101/647354
Identifikation einer Heterozygoten RIT1-Mutation in einem fetalen Fall von Noonan Syndrom mit gonadoblastoider, testiculärer Dysplasie mittels Exom-Sequenzierung
Geburtshilfe und Frauenheilkunde / Jul 03, 2015
Reischer, T., Schmid, M., Vodopiutz, J., Krampl-Bettlheim, E., Popitsch, N., & Streubel, B. (2015). Identifikation einer Heterozygoten RIT1-Mutation in einem fetalen Fall von Noonan Syndrom mit gonadoblastoider, testiculärer Dysplasie mittels Exom-Sequenzierung. Geburtshilfe Und Frauenheilkunde, 75(06). https://doi.org/10.1055/s-0035-1555047
Warren, Prof. Graham Barry, (born 25 Feb. 1948), Scientific Director, Max F. Perutz Laboratories, Vienna, 2007–17, now Professor Emeritus, University and Medical University of Vienna
Who's Who / Dec 01, 2007
Warren, Prof. Graham Barry, (born 25 Feb. 1948), Scientific Director, Max F. Perutz Laboratories, Vienna, 2007–17, now Professor Emeritus, University and Medical University of Vienna. (2007). Who’s Who. https://doi.org/10.1093/ww/9780199540884.013.38930
WebS 2012 Workshop Committee
2012 23rd International Workshop on Database and Expert Systems Applications / Sep 01, 2012
WebS 2012 Workshop Committee. (2012). 2012 23rd International Workshop on Database and Expert Systems Applications. https://doi.org/10.1109/dexa.2012.74
Dynamically Generated Scalable Vector Graphics (SVG) for Barrier-Free Web-Applications
Lecture Notes in Computer Science / Jan 01, 2006
Altmanninger, K., & Wöß, W. (2006). Dynamically Generated Scalable Vector Graphics (SVG) for Barrier-Free Web-Applications. Computers Helping People with Special Needs, 128–135. https://doi.org/10.1007/11788713_20
DISCLOSURE OF FUNDING ARRANGEMENTS Disclosure of the funding arrangement
Civil Procedure / Oct 02, 2012
DISCLOSURE OF FUNDING ARRANGEMENTS Disclosure of the funding arrangement. (2012). Civil Procedure, 129–129. https://doi.org/10.4324/9781843145684-22
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