Jessica Lumian, Ph.D.

Biotech industry Bioinformatics Scientist with PhD in microbiology

About

Dr. Jessica Lumian is a bioinformatics scientist specializing in microbiome and metagenomics. She earned a Ph.D. in Microbiology from the University of California, Davis in 2022 and a Bachelor's of Science in Biochemistry & Molecular Biology from Michigan State University in 2015. Dr. Lumian's research focuses on the intersection of microbial communities and computional analysis. She specializes in using k-mer based methods to identify strains and pathogens of interest in metagenomic data sets.

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Publications

The khmer software package: enabling efficient nucleotide sequence analysis

F1000Research

2015

Structural Chemistry and Properties of Metal Oxalates Containing a Long-Spanning Dipyridyl Ligand: Chain, Interpenetrated Diamondoid, Threaded-Loop Layer, and Self-Penetrated Topologies

Crystal Growth & Design

2015

Structural chemistry and magnetic properties of copper pyromellitate coordination polymers containing pyridylnicotinamide ligands

Inorganica Chimica Acta

2014

A molecular layer “fabric” with orthogonally woven coordination polymer chains

Inorganic Chemistry Communications

2016

Divalent metal pyromellitate coordination polymers containing bis(4-pyridylformyl)piperazine: Selection between simple chain and rare fsc network topologies

Inorganica Chimica Acta

2014

Divergent layer topologies in divalent metal aliphatic dicarboxylate coordination polymers containing 3-pyridylmethylnicotinamide

Journal of Molecular Structure

2015

Divalent metal sulfoisophthalate coordination polymers with isomeric pyridylnicotinamide coligands

Inorganica Chimica Acta

2014

Draft genome of tule elk Cervus canadensis nannodes

F1000Research

2017

Temperature-dependent polymorphism and magnetic properties of three-dimensional copper pyromellitate coordination polymers containing 4,4′-dipyridylamine

Journal of Solid State Chemistry

2015

Effect of Substituents on Topology and in situ Amide Hydrolysis on Cadmium Isophthalate Coordination Polymers Prepared Using a 4‐Pyridylnicotinamide Precursor

Zeitschrift für anorganische und allgemeine Chemie

2014

Metabolic Capacity of the Antarctic Cyanobacterium Phormidium pseudopriestleyi That Sustains Oxygenic Photosynthesis in the Presence of Hydrogen Sulfide

Genes

2021

Genomic profiles of four novel cyanobacteria MAGs from Lake Vanda, Antarctica: insights into photosynthesis, cold tolerance, and the circadian clock

Frontiers in Microbiology

2024

Biogeographic distribution of five Antarctic cyanobacteria using large-scale k-mer searching with sourmash branchwater

Frontiers in Microbiology

2024

Education

University of California, Davis

Ph.D., Microbiology / March, 2022

Davis, California, United States of America

Michigan State University

B.S., Biochemistry & Molecular Biology / June, 2015

East Lansing, Michigan, United States of America

Experience

University of California, Davis

Postdoctoral Scholar / March, 2022 — October, 2022

Pursued cutting-edge bioinformatics research focusing on detection of genomes in metagenomes using large-scale k-mer searching

Basepaws

Bioinformatics Scientist / October, 2022 — Present

Bioinformatics analysis of oral microbiome data

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