Ernesto Lowy

Senior Bioinformatician specialised in Cancer Genomics

Research Expertise

Data analysis
Data science
Bioinformatics
Genomics
Genetics
Cancer Research
Genetics (clinical)
Molecular Biology
Ecology, Evolution, Behavior and Systematics
Biological Psychiatry
Cell Biology
Cellular and Molecular Neuroscience
Pharmacology
Molecular Medicine
Biochemistry
Immunology
Immunology and Allergy
Computational Mathematics
Computational Theory and Mathematics
Computer Science Applications
Statistics and Probability
Biotechnology
Hematology
Cardiology and Cardiovascular Medicine
Animal Science and Zoology

Publications

The genome of melon ( Cucumis melo L.)
Proceedings of the National Academy of Sciences
2012
Faculty Opinions recommendation of Haplotype-resolved diverse human genomes and integrated analysis of structural variation.
Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
2021
Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells
Cell
2016
VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases
Nucleic Acids Research
2014
Highlights on Anopheles nili and Anopheles moucheti, Malaria Vectors in Africa
Anopheles mosquitoes - New insights into malaria vectors
2013
Ensembl Genomes 2016: more genomes, more complexity
Nucleic Acids Research
2015
High coverage whole genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios
Unknown Venue
2021
Faculty Opinions recommendation of Increased DNA methylation variability in type 1 diabetes across three immune effector cell types.
Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
2018
Phylogeography of crossbills, bullfinches, grosbeaks, and rosefinches
Cellular and Molecular Life Sciences
2001
Neuropeptide S receptor 1 is a nonhormonal treatment target in endometriosis
Science Translational Medicine
2021
Both morphological and molecular characters support speciation of South American siskins by sexual selection
Cellular and Molecular Life Sciences
2001
HLA-A, -B, -DQA1, -DQB1 and -DRB1 alleles in a Basque population from Spain
Human Immunology
2004
HLA-A, -B, -DQA1, -DQB1 and -DRB1 alleles in a population from the Cabuernigo Region of Spain
Human Immunology
2004
HLA-A, -B, -DQA1, -DQB1 and -DRB1 alleles in a population from the Cantabria Region of Spain
Human Immunology
2004
HLA Genes in the Chuvashian Population from European Russia: Admixture of Central European and Mediterranean Populations
Human Biology
2003
The evolution of theMHC-Ggene does not support a functional role for the complete protein
Immunological Reviews
2001
HLA molecular markers in Tuvinians: a population with both Oriental and Caucasoid characteristics
Annals of Human Genetics
2001
Variant calling on the GRCh38 assembly with the data from phase three of the 1000 Genomes Project
Wellcome Open Research
2019
Epigenomic and functional dynamics of human bone marrow myeloid differentiation to mature blood neutrophils
Unknown Venue
2018
Chronic lymphocytic leukemia cells are active participants in microenvironmental cross-talk
Haematologica
2017
LoRTE: Detecting transposon-induced genomic variants using low coverage PacBio long read sequences
Unknown Venue
2016
La proteómica y la metabolómica: los mecanismos de la enfermedad cardiovascular y el descubrimiento de biomarcadores
Revista Española de Cardiología
2013
Songbirds Conserved Sites and Intron Size of MHC Class I Molecules Reveal a Unique Evolution in Vertebrates
The Open Ornithology Journal
2010
A novel allele, HLA-G*010114, with a non-coding DNA base change in exon 2
Tissue Antigens
2008
HLA-A, -B, -DQA1, -DQB1 and -DRB1 alleles in a Pasiego (Pas Valley) population from Spain
Human Immunology
2004
HLA-A, -B, -DQB1 and -DRB1 alleles in a Mayan population from Guatemala
Human Immunology
2004
None
Oxford Music Online
2001
Variant calling across 505 openly consented samples from four Gambian populations on GRCh38
Wellcome Open Research
2021
The effects of common structural variants on 3D chromatin structure
BMC Genomics
2020
The International Genome Sample Resource (IGSR) collection of open human genomic variation resources
Nucleic Acids Research
2019
Variant calling on the GRCh38 assembly with the data from phase three of the 1000 Genomes Project
Wellcome Open Research
2019
Human-specific tandem repeat expansion and differential gene expression during primate evolution
Proceedings of the National Academy of Sciences
2019
Comparative genomic analysis of six Glossina genomes, vectors of African trypanosomes
Genome Biology
2019
Multi-platform discovery of haplotype-resolved structural variation in human genomes
Nature Communications
2019
Dynamics of Transcription Regulation in Human Bone Marrow Myeloid Differentiation to Mature Blood Neutrophils
Cell Reports
2018
The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia
Nature Medicine
2018
Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types
Genome Biology
2017
Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx
Genome Biology
2016
Increased DNA methylation variability in type 1 diabetes across three immune effector cell types
Nature Communications
2016
Distinct Trends of DNA Methylation Patterning in the Innate and Adaptive Immune Systems
Cell Reports
2016
The international Genome sample resource (IGSR): A worldwide collection of genome variation incorporating the 1000 Genomes Project data
Nucleic Acids Research
2016
Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes
Genome Biology
2016
Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies
Proceedings of the National Academy of Sciences
2015
Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes
Science
2015
Binding of the transcription factor Atf1 to promoters serves as a barrier to phase nucleosome arrays and avoid cryptic transcription
Nucleic Acids Research
2014
PRGdb 2.0: towards a community-based database model for the analysis of R-genes in plants
Nucleic Acids Research
2012
Foxp2 Regulates Gene Networks Implicated in Neurite Outgrowth in the Developing Brain
PLoS Genetics
2011
The Use of Genome-Wide eQTL Associations in Lymphoblastoid Cell Lines to Identify Novel Genetic Pathways Involved in Complex Traits
PLoS ONE
2011
TEQC: an R package for quality control in target capture experiments
Bioinformatics
2011
Characterization of a Family with Rare Deletions in CNTNAP5 and DOCK4 Suggests Novel Risk Loci for Autism and Dyslexia
Biological Psychiatry
2010
Evolution of the major histocompatibility complex class I genes in Serinus canaria from the Canary Islands is different from that of Asian and African continental Serinus species
Journal of Ornithology
2007
Erratum to: Rhodopechys obsoleta (desert finch): a pale ancestor of greenfinches (Carduelis spp.) according to molecular phylogeny
Journal of Ornithology
2006
Rhodopechys obsoleta (desert finch): a pale ancestor of greenfinches (Carduelis spp.) according to molecular phylogeny
Journal of Ornithology
2006
Origin of Mayans according to HLA genes and the uniqueness of Amerindians
Human Immunology
2004
Different evolutionary pathway of B*570101 and B*5801 ( B17 group) alleles based in intron sequences
Immunogenetics
2004
Origin of Mayans according to HLA genes and the uniqueness of Amerindians
Tissue Antigens
2003
HLA alleles in isolated populations from North Spain: Origin of the Basques and the ancient Iberians
Tissue Antigens
2003
The Old World Sparrows (Genus Passer) Phylogeography and Their Relative Abundance of Nuclear mtDNA Pseudogenes
Journal of Molecular Evolution
2001
A novel HLA-A*6816 allele possibly generated by a point mutation in a Chilean from Punta Arenas (Magellan Strait)
Immunogenetics
2000
An evolutionary overview of the MHC-G polymorphism: clues to the unknown function(s)
Major Histocompatibility Complex
2000
Detection of HLA-E and -G DNA alleles for population and disease studies
Cellular and Molecular Life Sciences (CMLS)
1999

Experience

European Bioinformatics Institute

Senior scientific programmer / September, 2013January, 2022

Biofidelity

Senior Bioinformatician / January, 2022Present

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