Francisco JRC Coelho

Researcher/ Microbiome/ Bussiness enthusiast

Aveiro

Research Expertise

Molecular biology
Microbial Ecology
Environmental Microbiology
Microbiome
Ecology
Nature and Landscape Conservation
Ecology, Evolution, Behavior and Systematics
Biotechnology
Applied Microbiology and Biotechnology
Soil Science
Environmental Chemistry
Global and Planetary Change
Microbiology
Aquatic Science
Genetics
Biochemistry
Oceanography
Pollution
Renewable Energy, Sustainability and the Environment
Virology
Microbiology (medical)

About

I am a generalist with a strong background in research and a passion for exploring new ideas and contributing to business development. My journey as a researcher began in 2009 at the University of Aveiro. Over the years, I progressed from a PhD student to a postdoctoral researcher and ultimately became a researcher, funding my positions through competitive calls. My technical background spans across several areas and with different degrees of expertise. These include microbiology, microbiome analysis, molecular biology, bioinformatic and biostatistics. I have authored and co-authored over 35 articles, some of which have been published in high profile scientific journals (https://www.cienciavitae.pt/portal/2119-2C29-3E33). I have co-founded two startups and was involved in all the process, including IP protection, prototype development, and engaging potential customers. I possess a comprehensive understanding of day-to-day business operations, including marketing, sales, and finance. I am driven by curiosity to learn and thrive in dynamic environments that foster innovation and growth.

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Publications

The sponge microbiome within the greater coral reef microbial metacommunity
Nature Communications
2019
Interactive effects of global climate change and pollution on marine microbes: the way ahead
Ecology and Evolution
2013
Unraveling the interactive effects of climate change and oil contamination on laboratory‐simulated estuarine benthic communities
Global Change Biology
2015
Isolation of Surfactant-Resistant Pseudomonads from the Estuarine Surface Microlayer
Journal of Microbiology and Biotechnology
2012
Effects of Monospecific Banks of Salt Marsh Vegetation on Sediment Bacterial Communities
Microbial Ecology
2010
Relation between bacterial activity in the surface microlayer and estuarine hydrodynamics
FEMS Microbiology Ecology
2011
Bacterial and microeukaryotic plankton communities in a semi-intensive aquaculture system of sea bass (Dicentrarchus labrax): A seasonal survey
Aquaculture
2019
Integrated analysis of bacterial and microeukaryotic communities from differentially active mud volcanoes in the Gulf of Cadiz
Scientific Reports
2016
Multitaxon activity profiling reveals differential microbial response to reduced seawater pH and oil pollution
Molecular Ecology
2016
Seasonal patterns of bacterioplankton composition in a semi-intensive European seabass (Dicentrarchus labrax) aquaculture system
Aquaculture
2018
Micro-eukaryotic plankton diversity in an intensive aquaculture system for production of Scophthalmus maximus and Solea senegalensis
Aquaculture
2018
Corrigendum: Formation of calcium chloride brines in volcaniclastic-rich sediments
Frontiers in Earth Science
2022
Study of the influence of tributyrin-supplemented diets on the gut bacterial communities of rainbow trout (Oncorhynchus mykiss)
Scientific Reports
2024
Effects of Reduced Seawater pH and Oil Contamination on Bacterial Communities and Biochemical Markers of Estuarine Animal Hosts
Environments
2024
A Study of Sponge Symbionts from Different Light Habitats
Microbial Ecology
2023
Brachybacterium atlanticum sp. nov., a novel marine bacterium isolated from the Atlantic Ocean
International Journal of Systematic and Evolutionary Microbiology
2023
Emiliania huxleyi—Bacteria Interactions under Increasing CO2 Concentrations
Microorganisms
2022
In vitro study of the modulatory effects of heat-killed bacterial biomass on aquaculture bacterioplankton communities
Scientific Reports
2022
Spatial and environmental variables structure sponge symbiont communities
Molecular Ecology
2022
Formation of calcium chloride brines in volcaniclastic-rich sediments
Frontiers in Earth Science
2022
Humic substances modulate fish bacterial communities in a marine recirculating aquaculture system
Aquaculture
2021
Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor
Annals of Microbiology
2020
Bacterial composition and putative functions associated with sponges, sediment and seawater from the Tioman coral reef system, Peninsular Malaysia
Marine Biology Research
2020
Effect of glycerol feed-supplementation on seabass metabolism and gut microbiota
Applied Microbiology and Biotechnology
2020
Characterization of bacterioplankton communities from a hatchery recirculating aquaculture system (RAS) for juvenile sole (Solea senegalensis) production
PLOS ONE
2019
Microcosm evaluation of the impact of oil contamination and chemical dispersant addition on bacterial communities and sediment remediation of an estuarine port environment
Journal of Applied Microbiology
2019
Independent and interactive effects of reduced seawater pH and oil contamination on subsurface sediment bacterial communities
Environmental Science and Pollution Research
2018
Compositional analysis of archaeal communities in high and low microbial abundance sponges in the Misool coral reef system, Indonesia
Marine Biology Research
2018
Sponge Prokaryote Communities in Taiwanese Coral Reef and Shallow Hydrothermal Vent Ecosystems
Microbial Ecology
2017
Sediment depth and habitat as predictors of the diversity and composition of sediment bacterial communities in an inter‐tidal estuarine environment
Marine Ecology
2017
Comparison of archaeal and bacterial communities in two sponge species and seawater from an Indonesian coral reef environment
Marine Genomics
2016
Development of a molecular methodology for fast detection of Photobacterium damselae subspecies in water samples
Aquaculture
2015
Heterotrophic activities of neustonic and planktonic bacterial communities in an estuarine environment (Ria de Aveiro)
Journal of Plankton Research
2013
Optimization of preservation and processing of sea anemones for microbial community analysis using molecular tools
Scientific Reports
2014
Development and validation of an experimental life support system for assessing the effects of global climate change and environmental contamination on estuarine and coastal marine benthic communities
Global Change Biology
2013
SELECTIVE CULTURES FOR THE ISOLATION OF BIOSURFACTANT PRODUCING BACTERIA: COMPARISON OF DIFFERENT COMBINATIONS OF ENVIRONMENTAL INOCULA AND HYDROPHOBIC CARBON SOURCES
Preparative Biochemistry and Biotechnology
2013
Exploring hydrocarbonoclastic bacterial ­communities in the estuarine surface microlayer
Aquatic Microbial Ecology
2011

Education

University of Aveiro

PhD in Biology – specialization in Microbiology / October, 2013

Aveiro

University of Aveiro

Master in Microbiology / December, 2008

Aveiro

University of Aveiro

Degree in Biology (Licenciatura) / July, 2007

Aveiro

Experience

University of Aveiro

Researcher / January, 2019February, 2023

Postdoc / November, 2014December, 2018

InnerCore Microbiome

CEO / October, 2020December, 2022

Co-founder and CEO

DNA TRUSTAG

Co-founder / January, 2016October, 2018

University of Aveiro

Ph.D. Student / March, 2009October, 2013

Links & Social Media

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