David LeBauer

Scientific Consultant | Agriculture, Carbon, Statistics, Modeling, Data Science

Research Expertise

Ecosystem Ecology
Agriculture
Biogeochemistry
Data Science

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Publications

NITROGEN LIMITATION OF NET PRIMARY PRODUCTIVITY IN TERRESTRIAL ECOSYSTEMS IS GLOBALLY DISTRIBUTED
Ecology
2008
Application of Real-Time PCR To Study Effects of Ammonium on Population Size of Ammonia-Oxidizing Bacteria in Soil
Applied and Environmental Microbiology
2004
Low levels of nitrogen addition stimulate decomposition by boreal forest fungi
Soil Biology and Biochemistry
2009
Facilitating feedbacks between field measurements and ecosystem models
Ecological Monographs
2013
Brazilian sugarcane ethanol as an expandable green alternative to crude oil use
Nature Climate Change
2017
Robust paths to net greenhouse gas mitigation and negative emissions via advanced biofuels
Proceedings of the National Academy of Sciences
2020
On improving the communication between models and data
Plant, Cell & Environment
2013
Ten Simple Rules for Digital Data Storage
PLOS Computational Biology
2016
A quantitative assessment of a terrestrial biosphere model's data needs across North American biomes
Journal of Geophysical Research: Biogeosciences
2014
Litter degradation rate and β-glucosidase activity increase with fungal diversity
Canadian Journal of Forest Research
2010
Data-Driven Artificial Intelligence for Calibration of Hyperspectral Big Data
IEEE Transactions on Geoscience and Remote Sensing
2022
Faculty Opinions recommendation of A reporting format for leaf-level gas exchange data and metadata.
Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
2021
Analysis of agriculture data using data mining techniques: application of big data
Journal of Big Data
2017
Reviews and syntheses: The promise of big soil data, moving current practices towards future potential
Unknown Venue
2021
What Does TERRA-REF’s High Resolution, Multi Sensor Plant Sensing Public Domain Data Offer the Computer Vision Community?
2021 IEEE/CVF International Conference on Computer Vision Workshops (ICCVW)
2021
Translating Probability Density Functions: From R to BUGS and Back Again
The R Journal
2013
Bison‐Fly: An open‐source UAV pipeline for plant breeding data collection
The Plant Phenome Journal
2022
Exosphere - Bringing The Cloud Closer
2020 IEEE/ACM International Workshop on Interoperability of Supercomputing and Cloud Technologies (SuperCompCloud)
2020
Predicting Spring Phenology in Deciduous Broadleaf Forests: An Open Community Forecast Challenge
SSRN Electronic Journal
2023
Transforming ANOVA and Regression statistics for Meta-analysis
Authorea
Flavonol, Anthocyanin, and Chlorophyll Indices using a Force-A Dualiex Scientific+ v1
Unknown Venue
2018
PECAn: workflow management for data assimilation and forecasting
Nature Precedings
2011
Unoccupied aerial systems adoption in agricultural research
Unknown Venue
2024
Validating DayCent-CR for cropland soil carbon offset reporting at a national scale
Geoderma
2023
Post-GWAS Prioritization of Genome-Phenome Associations in Sorghum
Unknown Venue
2023
Facilitating community unoccupied aerial systems (UAS, drone) knowledge, communication, and data processing across agriculture
Unknown Venue
2023
Annual Meeting of ASA, CSSA, and SSSA
Agronomy Journal
1960
2020 ASA, CSSA, and SSSA International Virtual Annual Meeting Highlights
CSA News
2021
Small Counter Unmanned Aerial Systems Testbed (cUAS)
NSARD virtual meeting, April 29, 2020
2020
Global Wheat Head Detection (GWHD) Dataset: A Large and Diverse Dataset of High-Resolution RGB-Labelled Images to Develop and Benchmark Wheat Head Detection Methods
Plant Phenomics
2020
Introduction
Soil-based Wastewater Treatment
2019
Developing Growth‐Associated Molecular Markers Via High‐Throughput Phenotyping in Spinach
The Plant Genome
2019
Beyond Modeling: A Roadmap to Community Cyberinfrastructure for Ecological Data-Model Integration
Unknown Venue
2020
Clowder
Proceedings of the Practice and Experience on Advanced Research Computing
2018
Perennial biomass crops on marginal land improve both regional climate and agricultural productivity
GCB Bioenergy
2022
Analysis of Nutrients and Phytochemicals content in Corn Silk(Zea. Mays)
International Journal of Science and Research (IJSR)
2017
Version Control for Software Code Using Git and GitHub
Raspberry Pi OS Text Editors, git, and LXC
2024
OURdata Index: Open, Useful, Reusable Government data, 2014
Unknown Venue
2015
Brown Dog: Leveraging everything towards autocuration
2015 IEEE International Conference on Big Data (Big Data)
2015
A holistic workflow development for agricultural supply chain analysis: Integration of meteorological forecasting, crop simulation, and supply chain optimization models
ASABE 1st Climate Change Symposium: Adaptation and Mitigation
2015
Electrochemically Modulated Extraction of Neodymium
ECS Meeting Abstracts
2014
Water quality effects of cellulosic biofuel crops grown on marginal land
2014 ASABE Annual International Meeting
2014
Planning for 2012 AGU Fall Meeting
Eos, Transactions American Geophysical Union
2012
95th ESA Annual Meeting
95th ESA Annual Meeting
2010
Impact of nitrogen allocation on growth and photosynthesis of Miscanthus (Miscanthus × giganteus)
GCB Bioenergy
2012
Linking big models to big data: efficient ecosystem model calibration through Bayesian model emulation
Unknown Venue
2018
Adoption of unoccupied aerial systems in agricultural research
The Plant Phenome Journal
2024
Predicting spring phenology in deciduous broadleaf forests: NEON phenology forecasting community challenge
Agricultural and Forest Meteorology
2024
Early Detection of Drought Stress in Durum Wheat Using Hyperspectral Imaging and Photosystem Sensing
Remote Sensing
2023
Increasing racial diversity in the North American Plant Phenotyping Network through conference participation support
The Plant Phenome Journal
2023
Reviews and syntheses: The promise of big diverse soil data, moving current practices towards future potential
Biogeosciences
2022
Expanded Potential Growing Region and Yield Increase for Agave americana with Future Climate
Agronomy
2021
Ten simple rules to cultivate transdisciplinary collaboration in data science
PLOS Computational Biology
2021
A reporting format for leaf-level gas exchange data and metadata
Ecological Informatics
2021
Global Wheat Head Detection 2021: An Improved Dataset for Benchmarking Wheat Head Detection Methods
Plant Phenomics
2021
On-farm land management strategies and production challenges in United States organic agricultural systems
Current Research in Environmental Sustainability
2021
Beyond ecosystem modeling: A roadmap to community cyberinfrastructure for ecological data‐model integration
Global Change Biology
2020
Photographing Agave for 3D reconstruction using Structure From Motion v1
Unknown Venue
2020
Do androids dream of electric sorghum?: Predicting Phenotypes from Multi-Scale Genomic and Environmental Data using Neural Networks and Knowledge Graphs
Unknown Venue
2020
UAV-BASED SORGHUM GROWTH MONITORING: A COMPARATIVE ANALYSIS OF LIDAR AND PHOTOGRAMMETRY
ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences
2020
An open, scalable, and flexible framework for automated aerial measurement of field experiments
Autonomous Air and Ground Sensing Systems for Agricultural Optimization and Phenotyping V
2020
A New Optical Remote Sensing Technique for High-Resolution Mapping of Soil Moisture
Frontiers in Big Data
2019
Reply to: Brazilian ethanol expansion subject to limitations
Nature Climate Change
2019
Seedling vigor v1
Unknown Venue
2017
BrAPI—an application programming interface for plant breeding applications
Bioinformatics
2019
TERRA-REF Data Processing Infrastructure
Proceedings of the Practice and Experience on Advanced Research Computing
2018
ForC: a global database of forest carbon stocks and fluxes
Ecology
2018
Root volume distribution of maturing perennial grasses revealed by correcting for minirhizotron surface effects
Plant and Soil
2017
BETYdb: a yield, trait, and ecosystem service database applied to second‐generation bioenergy feedstock production
GCB Bioenergy
2017
Carbon dynamics of mature and regrowth tropical forests derived from a pantropical database (TropForC‐db)
Global Change Biology
2016
Plants in silico: why, why now and what?—an integrative platform for plant systems biology research
Plant, Cell & Environment
2015
A physiological and biophysical model of coppice willow (Salix spp.) production yields for the contiguous USA in current and future climate scenarios
Plant, Cell & Environment
2015
Toward systems‐level analysis of agricultural production from crassulacean acid metabolism (CAM): scaling from cell to commercial production
New Phytologist
2015
Light to liquid fuel: theoretical and realized energy conversion efficiency of plants using Crassulacean Acid Metabolism (CAM) in arid conditions
Journal of Experimental Botany
2014
Ecophysiological screening of tree species for biomass production: trade‐off between production and water use
Ecosphere
2013
Predicting yields of short‐rotation hybrid poplar (Populus spp.) for the United States through model–data synthesis
Ecological Applications
2013
A quantitative review comparing the yield of switchgrass in monocultures and mixtures in relation to climate and management factors
GCB Bioenergy
2010

Education

University of California Irvine

PhD, Earth System Science / December, 2008

Irvine, California, United States of America

University of California Davis

MS, Ecology / June, 2003

Davis, California, United States of America

Duke University

BS, Biology / September, 1998

Durham, North Carolina, United States of America

Experience

Indigo Ag

February, 2023Present

The University of Arizona

Director of Data Science / July, 2018February, 2023

University of Illinois Urbana-Champaign

Research Scientist / September, 2012May, 2018

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