Ioanna Oikonomidi, Ph.D.

Molecular Cell Biologist, PhD

San Francisco, California, United States of America

About

Detail-oriented scientist (13+ years) with 6 years of industry experience. Strong foundation in cancer cell biology: trafficking and signaling pathways stress quality control cell cycle regulation and characterizing perturbed biological systems. With a demonstrated track record in hit discovery and validation as well as deciphering biological mechanisms of action. Proficiency with cloning in vitro cell-based viral or biochemical assays functional genomics screens as well as with in vivo model generation characterization and testing (such as PKPD and tumor efficacy studies). Proven ability to collaborate effectively within multidisciplinary teams skilled in independent thought as well as utilizing excellent communication skills to initiate and foster cross-functional collaboration and influence without authority in a team environment. Seeking to contribute expertise and interpersonal skills as a subject matter expert.

Education

Instituto Gulbenkian de Ciência

PhD student, Membrane Traffic Lab

Oeiras

National and Kapodistrian University of Athens

Biology, Biology / May, 2013

Athens

NEW UNIVERSITY OF LISBON

PhD / 2019

UNIVERSITY OF ATHENS

Biology Degree / 2012

Experience

Genentech Inc

PostDoc / October, 2019Present

Instituto Gulbenkian de Ciência

PhD student / February, 2014September, 2019

Genentech Inc.

PostDoctoral Researcher / October, 2019October, 2025

Developed and optimized cell-based potency and efficacy assays for therapeutic small molecule inhibitors (SMIs) and biologics such as Fc-fusion proteins and macrocycles; Translated strong findings to in vivo studies. Investigated cancer cell gene dependencies combining public datasets and cell line engineering with functional and phenotypic assays. Generated cell-cycle, cell-death biomarker profiling including multi-omics datasets to characterize perturbation in cancer cell lines. Deciphered a new pro-tumorigenic mechanism of action and identified the essential mechanistic drivers. Developed a plethora of co-IP assays for endogenous transmembrane proteins in order to exclude/confirm PPIs; optimized cell cycle synchronization assays; troubleshot transduction efficiencies for suspension cells and 3D-cultured cells; troubleshot electrophoretic methodologies for phosphorylation identifications.

Gulbenkian Institute of Science

PhD Student / January, 2013December, 2019

Specialized in membrane traffic with an emphasis on cell surface expression and endocytosis of the ADAM17 metalloprotease. Established human cell lines but also isolated and maintained primary tissues and cells (bone marrow derived macrophages and dendritic cells, splenocytes embryonic fibroblasts keratinocytes). Identified FRMD8 (iTAP) as a new ADAM17 sheddase interactor after validating direct binding to the sheddase complex. Characterized perturbed phenotype and identified iTAPs downstream mechanism of action (controlling internalization of complex) leading to 2 peer-reviewed publications (including a first-author publication in eLife). Generated a murine iTAP model (iTAP KO) with CRISPR-editing; Phenotypically described KO mice and their tissues. Translated in vitro findings into in vivo inflammatory and cancer model systems for more physiologically relevant target validation. Proposed iTAP as a superior pharmacological target to ADAM17 for disease-targeted drug delivery.

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