Work with Jeffrey Townsend | NotedSource
Jeffrey Townsend is a Professor of Organismic and
Evolutionary Biology at Yale University. He received his
Ph.D. from Harvard University in 2002 and his Sc.B. from
Brown University in 1994. He has been a teacher at St.
Ann's School and an Assistant Professor at the University
of Connecticut. He is currently the Elihu Professor of
Biostatistics at Yale University.
https://cv.notedsource.io/me/JeffreyTownsend
Jeffrey Townsend
Professor of Biostatistics and Ecology & Evolutionary Biology
New Haven, CT, Connecticut, United States
of America
Research Expertise
Evolutionary Genomics
Microbiology
Infectious Diseases
Genetics
Cell Biology
Ecology, Evolution, Behavior and Systematics
Molecular Biology
Physiology
Biomedical Engineering
Molecular Medicine
Applied Microbiology and Biotechnology
Bioengineering
Biotechnology
Biochemistry
Biomaterials
Biophysics
Oncology
Hematology
Genetics (clinical)
Health Informatics
Computer Science Applications
Virology
Microbiology (medical)
Parasitology
Developmental Biology
Cancer Research
Information Systems
Pharmacology (medical)
Pharmacology
Public Health, Environmental and Occupational Health
Epidemiology
Applied Mathematics
Structural Biology
Immunology and Allergy
Immunology
Computational Mathematics
Computational Theory and Mathematics
Statistics and Probability
Animal Science and Zoology
Histology
Pathology and Forensic Medicine
Library and Information Sciences
Pulmonary and Respiratory Medicine
Modeling and Simulation
Health Policy
Internal Medicine
Neurology (clinical)
Cellular and Molecular Neuroscience
Ecology
Urology
Oral Surgery
Radiology, Nuclear Medicine and imaging
Radiation
About
Jeffrey Townsend is a Professor of Organismic
and Evolutionary Biology at Yale University.
He received his Ph.D. from Harvard University
in 2002 and his Sc.B. from Brown University in
1994. He has been a teacher at St. Ann's
School and an Assistant Professor at the
University of Connecticut. He is currently the
Elihu Professor of Biostatistics at Yale
University.
Legacy Map
Full ViewPublications
A comprehensive phylogeny of birds (Aves)
using targeted next-generation DNA
sequencing
Nature
2015
Horizontal gene transfer, genome
innovation and evolution
Nature Reviews Microbiology
2005
The Ascomycota Tree of Life: A Phylum-wide
Phylogeny Clarifies the Origin and
Evolution of Fundamental Reproductive and
Ecological Traits
Systematic Biology
2009
Eukaryotic microbes, species recognition
and the geographic limits of species:
examples from the kingdom Fungi
Philosophical Transactions of the Royal
Society B: Biological Sciences
2006
Strategies for containing Ebola in West
Africa
Science
2014
Profiling Phylogenetic Informativeness
Systematic Biology
2007
Phylogenetic and phylogenomic overview of
the Polyporales
Mycologia
2013
The durability of immunity against
reinfection by SARS-CoV-2: a comparative
evolutionary study
The Lancet Microbe
2021
Multifactorial experimental design and the
transitivity of ratios with spotted DNA
microarrays
BMC Genomics
2003
Gene expression profiling of mouse
postnatal cerebellar development using
cDNA microarrays
Gene
2004
Horizontal Acquisition of Divergent
Chromosomal DNA in Bacteria: Effects of
Mutator Phenotypes
Genetics
2003
Potential effectiveness of long-acting
injectable pre-exposure prophylaxis for
HIV prevention in men who have sex with
men: a modelling study
The Lancet HIV
2018
Estimation of Neutral Mutation Rates and
Quantification of Somatic Variant
Selection Using cancereffectsizeR
Cancer Research
2022
Infection by SARS‐CoV‐2 with alternate
frequencies of mRNA vaccine boosting
Journal of Medical Virology
2023
Jot: guiding journal selection with
suitability metrics
Journal of the Medical Library
Association
2022
In Response to “De Novo KRAS G12C-Mutant
SCLC: A Case Report”
JTO Clinical and Research Reports
2022
Not only mutations but also tumorigenesis
can be substantially attributed to DNA
damage from reactive oxygen species in
RUNX1::RUNX1T1-fusion-positive acute
myeloid leukemia
Leukemia
2022
The durability of natural infection and
vaccine-induced immunity against future
infection by SARS-CoV-2
Proceedings of the National Academy of
Sciences
2022
Cancer Relevance of Human Genes
JNCI: Journal of the National Cancer
Institute
2022
Secondary Metabolism Gene Clusters Exhibit
Increasingly Dynamic and Differential
Expression during Asexual Growth,
Conidiation, and Sexual Development in
Neurospora crassa
mSystems
2022
Transcriptional Divergence Underpinning
Sexual Development in the Fungal Class
Sordariomycetes
mBio
2022
A phylogenetic approach to study the
evolution of somatic mutational processes
in cancer
Communications Biology
2022
Attribution of Cancer Origins to
Endogenous, Exogenous, and Preventable
Mutational Processes
Molecular Biology and Evolution
2022
Quarantine and testing strategies to
ameliorate transmission due to travel
during the COVID-19 pandemic: a modelling
study
The Lancet Regional Health -
Europe
2022
Premetastatic shifts of endogenous and
exogenous mutational processes support
consolidative therapy in EGFR-driven lung
adenocarcinoma
Cancer Letters
2022
Projecting the seasonality of endemic
COVID-19
Unknown Venue
2022
Pairwise and higher-order epistatic
effects among somatic cancer mutations
across oncogenesis
Unknown Venue
2022
Environmental and sex-specific molecular
signatures of glioma causation
Neuro-Oncology
2021
The Prognostic Value of an RT-PCR Test for
Severe Acute Respiratory
Syndrome Coronavirus 2 (SARS-CoV-2)
Is Contingent on Timing across Disease
Time Course in addition to Assay
Sensitivity
The Journal of Molecular
Diagnostics
2022
Heavy mutagenesis by tobacco leads to lung
adenocarcinoma tumors with KRAS G12
mutations other than G12D, leading KRAS
G12D tumors—on average—to exhibit a lower
mutation burden
Lung Cancer
2022
Sequencing and Analysis of the Entire
Genome of the Mycoparasitic Bioeffector
Fungus Trichoderma asperelloides Strain T
203 (Hypocreales)
Microbiology Resource
Announcements
2022
The somatic molecular evolution of cancer:
Mutation, selection, and epistasis
Progress in Biophysics and Molecular
Biology
2021
Chemsearch: collaborative compound
libraries with structure-aware browsing
Bioinformatics Advances
2021
Mechanistic basis of post-treatment
control of SIV after anti-α4β7 antibody
therapy
PLOS Computational Biology
2021
Clinically relevant shifts in endogenous
and exogenous mutational processes
proximate to metastasis support local
consolidative treatment in EGFR-driven
non-small cell lung cancer
Unknown Venue
2021
Quarantine and testing strategies to
ameliorate transmission due to travel
during the COVID-19 pandemic: a modelling
study
Unknown Venue
2021
Optimal COVID-19 quarantine and testing
strategies
Nature Communications
2021
Cancer relevance of human genes
Unknown Venue
2021
Comparative analyses of FDA EUA-approved
rapid antigen tests and RT-PCR for
COVID-19 quarantine and surveillance-based
isolation
Unknown Venue
2021
Identifying modules of cooperating cancer
drivers
Molecular Systems Biology
2021
Comparative Genomics within and across
Bilaterians Illuminates the Evolutionary
History of ALK and LTK Proto-Oncogene
Origination and Diversification
Genome Biology and Evolution
2020
Attribution of Cancer Origins to
Endogenous, Exogenous, and Actionable
Mutational Processes
Unknown Venue
2020
Unmatched Level of Molecular Convergence
among Deeply Divergent Complex
Multicellular Fungi
Molecular Biology and Evolution
2020
Non-Coding Mutations in Urothelial Bladder
Cancer: Biological and Clinical Relevance
and Potential Utility as Biomarkers
Bladder Cancer
2020
Germline variant burden in cancer genes
correlates with age at diagnosis and
somatic mutation burden
Nature Communications
2020
Transfer RNA methyltransferase gene NSUN2
mRNA expression modifies the effect of T
cell activation score on patient survival
in head and neck squamous carcinoma
Oral Oncology
2020
Re: Ming-Jun Shi, Xiang-Yu Meng, Philippe
Lamy, et al. APOBEC-mediated Mutagenesis
as a Likely Cause of FGFR3 S249C Mutation
Over-representation in Bladder Cancer. Eur
Urol 2019;76:9–13
European Urology
2020
Dogs and pigs are transport hosts of
Necator americanus
: Molecular evidence for a zoonotic
mechanism of human hookworm transmission
in Ghana
Zoonoses and Public Health
2020
Identifying Modules of Cooperating Cancer
Drivers
Unknown Venue
2020
Implementation of Syringe Services
Programs to Prevent Rapid Human
Immunodeficiency Virus Transmission in
Rural Counties in the United States: A
Modeling Study
Clinical Infectious Diseases
2019
Inferring Tumor Proliferative Organization
from Phylogenetic Tree Measures in a
Computational Model
Systematic Biology
2019
Molecular Biology and Evolution of Cancer:
From Discovery to Action
Molecular Biology and Evolution
2019
Optimal COVID-19 quarantine and testing
strategies
Unknown Venue
2020
Integrative Activity of Mating Loci,
Environmentally Responsive Genes, and
Secondary Metabolism Pathways during
Sexual Development of Chaetomium globosum
mBio
2019
A multigene phylogeny toward a new
phylogenetic classification of
Leotiomycetes
IMA Fungus
2019
Modelling microbial infection to address
global health challenges
Nature Microbiology
2019
GEM-NET: Lessons in Multi-Institution
Teamwork Using Collaboration Software
ACS Central Science
2019
The landscape of novel and complementary
targets for immunotherapy: an analysis of
gene expression in the tumor
microenvironment
Oncotarget
2019
Comparative Genomics and Transcriptomics
During Sexual Development Gives Insight
Into the Life History of the Cosmopolitan
Fungus Fusarium neocosmosporiellum
Frontiers in Microbiology
2019
Combined Aurora Kinase A (AURKA) and WEE1
Inhibition Demonstrates Synergistic
Antitumor Effect in Squamous Cell
Carcinoma of the Head and Neck
Clinical Cancer Research
2019
APOBEC-induced mutations and their cancer
effect size in head and neck squamous cell
carcinoma
Oncogene
2019
Metabolism and Development during Conidial
Germination in Response to a
Carbon-Nitrogen-Rich Synthetic or a
Natural Source of Nutrition in
Neurospora crassa
mBio
2019
Wagging the long tail of drivers of
prostate cancer
PLOS Genetics
2019
Optimal Rates for Phylogenetic Inference
and Experimental Design in the Era of
Genome-Scale Data Sets
Systematic Biology
2018
Evolutionary analyses guide selection of
model systems to investigate
proto-oncogene function in ALK and LTK
Unknown Venue
2019
Identifying Combinations of Cancer Drivers
in Individual Patients
Unknown Venue
2019
Modeling Approaches Toward Understanding
Infectious Disease Transmission
Immunoepidemiology
2019
Unmatched level of molecular convergence
among deeply divergent complex
multicellular fungi
Unknown Venue
2019
Somatic evolutionary timings of driver
mutations
BMC Cancer
2018
Effect Sizes of Somatic Mutations in
Cancer
JNCI: Journal of the National Cancer
Institute
2018
The critical importance of retention in
HIV prevention
The Lancet HIV
2018
Using evolutionary genomics,
transcriptomics, and systems biology to
reveal gene networks underlying fungal
development
Fungal Biology Reviews
2018
Developmental Dynamics of Long Noncoding
RNA Expression during Sexual Fruiting Body
Formation in Fusarium graminearum
mBio
2018
Genomic Comparison Among Global Isolates
of L. interrogans Serovars Copenhageni and
Icterohaemorrhagiae Identified Natural
Genetic Variation Caused by an Indel
Frontiers in Cellular and Infection
Microbiology
2018
Neutral Theory and the Somatic Evolution
of Cancer
Molecular Biology and Evolution
2018
Heterogeneity and mutation in KRAS and
associated oncogenes: evaluating the
potential for the evolution of resistance
to targeting of KRAS G12C
Oncogene
2018
Analysis of mutation, selection, and
epistasis: an informed approach to cancer
clinical trials
Oncotarget
2018
CDKN2A Copy Number Loss Is an Independent
Prognostic Factor in HPV-Negative Head and
Neck Squamous Cell Carcinoma
Frontiers in Oncology
2018
Lvr, a Signaling System That Controls
Global Gene Regulation and Virulence in
Pathogenic Leptospira
Frontiers in Cellular and Infection
Microbiology
2018
Sexual stage-induced long noncoding RNAs
in the filamentous fungus
Fusarium graminearum
Unknown Venue
2018
Light sensing by opsins and fungal
ecology: NOP‐1 modulates entry into sexual
reproduction in response to environmental
cues
Molecular Ecology
2017
Neutral Theory and the Somatic Evolution
of Cancer
Molecular Biology and Evolution
2018
Primary hepatic neuroendocrine carcinoma:
report of two cases and literature review
BMC Clinical Pathology
2018
The Cancer Tree
Scientific American
2018
Detection of Regional Variation in
Selection Intensity within Protein-Coding
Genes Using DNA Sequence Polymorphism and
Divergence
Molecular Biology and Evolution
2017
The Moran coalescent in a discrete
one-dimensional spatial model
Unknown Venue
2017
Distributions of Mutational Effects and
the Estimation of Directional Selection in
Divergent Lineages of
Arabidopsis thaliana
Genetics
2017
The ancestral levels of transcription and
the evolution of sexual phenotypes in
filamentous fungi
PLOS Genetics
2017
The likelihood of heterogeneity or
additional mutation in KRAS or associated
oncogenes to compromise targeting of
oncogenic KRAS G12C
Unknown Venue
2017
New insights on the sister lineage of
percomorph fishes with an anchored hybrid
enrichment dataset
Molecular Phylogenetics and
Evolution
2017
PhyloOncology: Understanding cancer
through phylogenetic analysis
Biochimica et Biophysica Acta (BBA) -
Reviews on Cancer
2017
Mutation profiles in early-stage lung
squamous cell carcinoma with clinical
follow-up and correlation with markers of
immune function
Annals of Oncology
2017
Whole-exome sequencing and immune
profiling of early-stage lung
adenocarcinoma with fully annotated
clinical follow-up
Annals of Oncology
2017
A working model of the deep relationships
of diverse modern human genetic lineages
outside of Africa
Molecular Biology and Evolution
2017
Maximizing Power in Phylogenetics and
Phylogenomics: A Perspective Illuminated
by Fungal Big Data
Fungal Phylogenetics and
Phylogenomics
2017
Oncogenes without a neighboring
tumor-suppressor gene are more prone to
amplification
Molecular Biology and Evolution
2017
Preface
Fungal Phylogenetics and
Phylogenomics
2017
Climatic and evolutionary drivers of phase
shifts in the plague epidemics of colonial
India
Proceedings of the National Academy of
Sciences
2016
One Health approach to cost-effective
rabies control in India
Proceedings of the National Academy of
Sciences
2016
PhyInformR: phylogenetic experimental
design and phylogenomic data exploration
in R
BMC Evolutionary Biology
2016
Vaccination strategies against respiratory
syncytial virus
Proceedings of the National Academy of
Sciences
2016
PathScore: a web tool for identifying
altered pathways in cancer data
Bioinformatics
2016
Cost-Effectiveness of Pertussis
Vaccination During Pregnancy in the United
States
American Journal of Epidemiology
2016
Cost-effectiveness of next-generation
vaccines: The case of pertussis
Vaccine
2016
The Fast-Evolving
phy-2
Gene Modulates Sexual Development in
Response to Light in the Model Fungus
Neurospora crassa
mBio
2016
Retrospective Analysis of the 2014–2015
Ebola Epidemic in Liberia
The American Journal of Tropical
Medicine and Hygiene
2016
Quantifying Transmission ofClostridium difficilewithin and outside Healthcare Settings
Emerging Infectious Diseases
2016
Determinants of Human African
Trypanosomiasis Elimination via
Paratransgenesis
PLOS Neglected Tropical Diseases
2016
Early and multiple origins of metastatic
lineages within primary tumors
Proceedings of the National Academy of
Sciences
2016
The Impact of Enhanced Screening and
Treatment on Hepatitis C in the United
States
Clinical Infectious Diseases
2015
Optimizing age of cytomegalovirus
screening and vaccination to avert
congenital disease in the US
Vaccine
2016
A comprehensive phylogeny of birds (Aves)
using targeted next-generation DNA
sequencing
Nature
2016
Future Perspectives and Challenges of
Fungal Systematics in the Age of Big Data
Biology of Microfungi
2016
Genomic and Gene-Expression Comparisons
among Phage-Resistant Type-IV Pilus
Mutants of Pseudomonas syringae pathovar
phaseolicola
PLOS ONE
2015
Quantitative analyses and modelling to
support achievement of the 2020 goals for
nine neglected tropical diseases
Parasites & Vectors
2015
Utility of characters evolving at diverse
rates of evolution to resolve quartet
trees with unequal branch lengths:
analytical predictions of long-branch
effects
BMC Evolutionary Biology
2015
Impact of bed capacity on spatiotemporal
shifts in Ebola transmission
Proceedings of the National Academy of
Sciences
2015
Inferring the Origin of Metastases from
Cancer Phylogenies
Cancer Research
2015
Gene Expression Evolves under a
House-of-Cards Model of Stabilizing
Selection
Molecular Biology and Evolution
2015
Solving the ecological puzzle of
mycorrhizal associations using data from
annotated collections and environmental
samples - an example of saddle fungi
Environmental Microbiology
Reports
2015
Harnessing Case Isolation and Ring
Vaccination to Control Ebola
PLOS Neglected Tropical Diseases
2015
Integrating Community-Based Interventions
to Reverse the Convergent TB/HIV Epidemics
in Rural South Africa
PLOS ONE
2015
Epidemiological and Viral Genomic Sequence
Analysis of the 2014 Ebola Outbreak
Reveals Clustered Transmission
Clinical Infectious Diseases
2014
Under-reporting and case fatality
estimates for emerging epidemics
BMJ
2015
Neural Gene Expression Profiles and
Androgen Levels Underlie Alternative
Reproductive Tactics in the Ocellated
Wrasse,Symphodus ocellatus
Ethology
2014
H-CLAP: hierarchical clustering within a
linear array with an application in
genetics
Statistical Applications in Genetics
and Molecular Biology
2015
Correction: Harnessing Case Isolation and
Ring Vaccination to Control Ebola
PLOS Neglected Tropical Diseases
2015
Phylogenetic informativeness reconciles
ray-finned fish molecular divergence times
BMC Evolutionary Biology
2014
The peopling of the African continent and
the diaspora into the new world
Current Opinion in Genetics &
Development
2014
Gene Expression Differences among Three
Neurospora Species Reveal Genes Required
for Sexual Reproduction in Neurospora
crassa
PLoS ONE
2014
Genome-Wide Characterization of
Light-Regulated Genes inNeurospora crassa
G3 Genes|Genomes|Genetics
2014
Cellular Superspreaders: An
Epidemiological Perspective on HIV
Infection inside the Body
PLoS Pathogens
2014
The impact of incorporating molecular
evolutionary model into predictions of
phylogenetic signal and noise
Frontiers in Ecology and
Evolution
2014
Probabilistic uncertainty analysis of
epidemiological modeling to guide public
health intervention policy
Epidemics
2014
Global Gene Expression and Focused
Knockout Analysis Reveals Genes Associated
with Fungal Fruiting Body Development in
Neurospora crassa
Eukaryotic Cell
2014
Detecting rare gene transfer events in
bacterial populations
Frontiers in Microbiology
2014
Optimized primers and other critical
conditions for efficient fusion PCR to
generate knockout vectors in filamentous
fungi.
Fungal Genetics Reports
2013
Sex-linked transcriptional divergence in
the hermaphrodite fungusNeurospora tetrasperma
Proceedings of the Royal Society B:
Biological Sciences
2013
Epidemiological mechanisms of genetic
resistance to kuru
Journal of The Royal Society
Interface
2013
Potential Cost-Effectiveness of
Schistosomiasis Treatment for Reducing HIV
Transmission in Africa – The Case of
Zimbabwean Women
PLoS Neglected Tropical Diseases
2013
AuthorReward: increasing community
curation in biological knowledge wikis
through automated authorship
quantification
Bioinformatics
2013
Optimal targeting of seasonal influenza
vaccination toward younger ages is robust
to parameter uncertainty
Vaccine
2013
Cost-effectiveness of a community-based
intervention for reducing the transmission
of
Schistosoma haematobium
and HIV in Africa
Proceedings of the National Academy of
Sciences
2013
Yeast response to LA virus indicates
coadapted global gene expression during
mycoviral infection
FEMS Yeast Research
2013
Response to: The relative utility of
sequence divergence and phylogenetic
informativeness profiling in phylogenetic
study design
Molecular Phylogenetics and
Evolution
2013
Evaluating Phylogenetic Informativeness as
a Predictor of Phylogenetic Signal for
Metazoan, Fungal, and Mammalian
Phylogenomic Data Sets
BioMed Research International
2013
Controlling Antimicrobial Resistance
through Targeted, Vaccine-Induced
Replacement of Strains
PLoS ONE
2012
Reevaluation of Epidemiological Data
Demonstrates That It Is Consistent With
Cross-Immunity Among Human Papillomavirus
Types
Journal of Infectious Diseases
2012
Phylogenetic Signal and Noise: Predicting
the Power of a Data Set to Resolve
Phylogeny
Systematic Biology
2012
The influence of altruism on influenza
vaccination decisions
Journal of The Royal Society
Interface
2012
Potential for Rabies Control through Dog
Vaccination in Wildlife-Abundant
Communities of Tanzania
PLoS Neglected Tropical Diseases
2012
Resampling QTL Effects in the QTL Sign
Test Leads to Incongruous Sensitivity to
Variance in Effect Size
G3 Genes|Genomes|Genetics
2012
Transcriptome analyses during fruiting
body formation in Fusarium graminearum and
Fusarium verticillioides reflect species
life history and ecology
Fungal Genetics and Biology
2012
Sex-specific gene expression during
asexual development of Neurospora crassa
Fungal Genetics and Biology
2012
RBE controls microRNA164 expression to
effect floral organogenesis
Development
2012
Differential impact of nutrition on
developmental and metabolic gene
expression during fruiting body
development in Neurospora crassa
Fungal Genetics and Biology
2012
A Test for Selection Employing
Quantitative Trait Locus and Mutation
Accumulation Data
Genetics
2012
Abundant Gene-by-Environment Interactions
in Gene Expression Reaction Norms to
Copper within Saccharomyces cerevisiae
Genome Biology and Evolution
2012
Analyses of expressed sequence tags in
Neurosporareveal rapid evolution of genes
associated with the early stages of sexual
reproduction in fungi
BMC Evolutionary Biology
2012
Assessing the Probability of Detection of
Horizontal Gene Transfer Events in
Bacterial Populations
Frontiers in Microbiology
2012
Codon Deviation Coefficient: a novel
measure for estimating codon usage bias
and its statistical significance
BMC Bioinformatics
2012
PhyDesign: an online application for
profiling phylogenetic informativeness
BMC Evolutionary Biology
2011
Data Integration in Bioinformatics:
Current Efforts and Challenges
Bioinformatics - Trends and
Methodologies
2011
Phylogenetic informativeness profiling of
12 genes for 28 vertebrate taxa without
divergence dates
Molecular Phylogenetics and
Evolution
2011
SIR2 and other genes are abundantly
expressed in long-lived natural segregants
for replicative aging of the budding yeast
Saccharomyces cerevisiae
FEMS Yeast Research
2011
Taxon Sampling and the Optimal Rates of
Evolution for Phylogenetic Inference
Systematic Biology
2011
Tasting Soil Fungal Diversity with Earth
Tongues: Phylogenetic Test of SATé
Alignments for Environmental ITS Data
PLoS ONE
2011
Retrospective evidence for a biological
cost of vancomycin resistance determinants
in the absence of glycopeptide selective
pressures
Journal of Antimicrobial
Chemotherapy
2011
Getting the Most Out of Your Fungal
Microarray Data: Two Cost- and
Time-Effective Methods
Methods in Molecular Biology
2011
Northern species of earth tongue genus
Thuemenidium revisited, considering
morphology, ecology and molecular
phylogeny
Mycologia
2010
LOX: inferring Level Of eXpression from
diverse methods of census sequencing
Bioinformatics
2010
Optimal Selection of Gene and Ingroup
Taxon Sampling for Resolving Phylogenetic
Relationships
Systematic Biology
2010
Identification of new molecular markers
for assembling the eukaryotic tree of life
Molecular Phylogenetics and
Evolution
2010
The filamentous fungal gene expression
database (FFGED)
Fungal Genetics and Biology
2010
Multi-targeted priming for genome-wide
gene expression assays
BMC Genomics
2010
Evolving gene expression: from G to E to
G×E
Trends in Ecology & Evolution
2009
<I>Geoglossomycetes</I> cl.
nov., <I>Geoglossales</I> ord.
nov. and taxa above class rank in the
<I>Ascomycota</I> Tree of Life
Persoonia - Molecular Phylogeny and
Evolution of Fungi
2009
Maximum-Likelihood Model Averaging To
Profile Clustering of Site Types across
Discrete Linear Sequences
PLoS Computational Biology
2009
Factors affecting the reversal of
antimicrobial-drug resistance
The Lancet Infectious Diseases
2009
Evolution of Reproductive Morphology in
Leaf Endophytes
PLoS ONE
2009
Measuring Transcription Factor–Binding
Site Turnover: A Maximum Likelihood
Approach Using Phylogenies
Genome Biology and Evolution
2009
Article Commentary: Snapshots of Tree
Space
Evolutionary Bioinformatics
2009
RNA extraction, probe preparation, and
competitive hybridization for
transcriptional profiling using Neurospora
crassa long-oligomer DNA microarrays
Fungal Genetics Reports
2008
The Phylogenetic Informativeness of
Nucleotide and Amino Acid Sequences for
Reconstructing the Vertebrate Tree
Journal of Molecular Evolution
2008
Bringing Web 2.0 to bioinformatics
Briefings in Bioinformatics
2008
HCLS 2.0/3.0: Health care and life
sciences data mashup using Web 2.0/3.0
Journal of Biomedical Informatics
2008
Sleuthing the difference a nucleotide can
make
Molecular Ecology
2008
Quantifying variation in gene expression
Molecular Ecology
2007
Enabling a Community to Dissect an
Organism: Overview of the Neurospora
Functional Genomics Project
Fungal Genomics
2007
Phase-specific gene expression underlying
morphological adaptations of the dimorphic
human pathogenic fungus, Coccidioides
posadasii
Fungal Genetics and Biology
2006
Population structure and gene evolution
inSaccharomyces cerevisiae
FEMS Yeast Research
2006
Ecological and evolutionary genomics of
Saccharomyces cerevisiae
Molecular Ecology
2006
Long-oligomer microarray profiling in
Neurospora crassa reveals the
transcriptional program underlying
biochemical and physiological events of
conidial germination
Nucleic Acids Research
2005
Concerted Evolution in the Repeats of an
Immunomodulating Cell Surface Protein,
SOWgp, of the Human Pathogenic Fungi
Coccidioides immitis and
C. posadasii
Genetics
2005
A Bayesian method for analysing spotted
microarray data
Briefings in Bioinformatics
2005
Designing Experiments Using Spotted
Microarrays to Detect Gene Regulation
Differences Within and Among Species
Methods in Enzymology
2005
Monitoring and modeling horizontal gene
transfer
Nature Biotechnology
2004
Mitochondrial genome size variation in New
World and Old World populations of
Drosophila melanogaster
Heredity
2004
Monitoring horizontal gene transfer
Nature Biotechnology
2004
Population Genetic Variation in
Genome-Wide Gene Expression
Molecular Biology and Evolution
2003
Pathway Processor: A Tool for
Integrating Whole-Genome Expression
Results into Metabolic Networks
Genome Research
2002
Manifold anomalies in gene expression in a
vineyard isolate of
Saccharomyces cerevisiae
revealed by DNA microarray analysis
Proceedings of the National Academy of
Sciences
2000
Solvent Accessibility and Purifying
Selection Within Proteins of Escherichia
coli and Salmonella enterica
Molecular Biology and Evolution
2000
Gene expression profiling in evolutionary
genetics
The Evolution of Population
Biology
2004
Radiation-Specific Clinical Data Should Be
Included in Existing Large-Scale Genomic
Datasets
International Journal of Radiation
Oncology*Biology*Physics
2017
Education
Harvard University
Ph.D., Organismic and Evolutionary Biology / May, 2002
Cambridge, Massachusetts, United
States of America
Brown University
Sc.B., Biology / May, 1994
Providence, Rhode Island, United
States of America
Experience
Yale University
Professor / July, 2018 — Present
Elihu Professor of Biostatistics / July, 2018 — Present
Elihu Associate Professor of Biostatistics / July, 2017 — June, 2018
Associate Professor / July, 2013 — June, 2018
Associate Professor / July, 2013 — June, 2017
Assistant Professor / July, 2006 — June, 2013
University of Connecticut
Assistant Professor / August, 2004 — May, 2006
St. Ann's School
Teacher / September, 1994 — June, 1997
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At NotedSource, we believe that professors, post-docs, scientists and other researchers have deep, untapped knowledge and expertise that can be leveraged to drive innovation within companies. NotedSource is committed to bridging the gap between academia and industry by providing a platform for collaboration with industry and networking with other researchers.
For industry, NotedSource identifies the right academic experts in 24 hours to help organizations build and grow. With a platform of thousands of knowledgeable PhDs, scientists, and industry experts, NotedSource makes connecting and collaborating easy.
For academic researchers such as professors, post-docs, and Ph.D.s, NotedSource provides tools to discover and connect to your colleagues with messaging and news feeds, in addition to the opportunity to be paid for your collaboration with vetted partners.
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