Thomas Bitterman, Ph.D.
Senior Lecturer, Maastricht University
Research Expertise
Publications
Simulation as a service (SMaaS): a cloud-based framework to support the educational use of scientific software
International Journal of Cloud Computing / Jan 01, 2014
Bitterman, T., Calyam, P., Berryman, A., Hudak, D. E., Li, n, Chalker, A., Gordon, S., Zhang, D., Cai, D., Lee, C., & Ramnath, R. (2014). Simulation as a service (SMaaS): a cloud-based framework to support the educational use of scientific software. International Journal of Cloud Computing, 3(2), 177. https://doi.org/10.1504/ijcc.2014.062272
WordSeeker: concurrent bioinformatics software for discovering genome-wide patterns and word-based genomic signatures
BMC Bioinformatics / Dec 01, 2010
Lichtenberg, J., Kurz, K., Liang, X., Al-ouran, R., Neiman, L., Nau, L. J., Welch, J. D., Jacox, E., Bitterman, T., Ecker, K., Elnitski, L., Drews, F., Lee, S. S., & Welch, L. R. (2010). WordSeeker: concurrent bioinformatics software for discovering genome-wide patterns and word-based genomic signatures. BMC Bioinformatics, 11(S12). https://doi.org/10.1186/1471-2105-11-s12-s6
OSC OnDemand
Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery / Jul 22, 2013
Hudak, D. E., Bitterman, T., Carey, P., Johnson, D., Franz, E., Brady, S., & Diwan, P. (2013, July 22). OSC OnDemand: a web platform integrating access to HPC systems, web and VNC applications. Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery. https://doi.org/10.1145/2484762.2484780
Genetic Algorithms and the Satisfiability of Large-Scale Boolean Expressions.
Bitterman, T. (n.d.). Genetic Algorithms and the Satisfiability of Large-Scale Boolean Expressions. [Louisiana State University Libraries]. https://doi.org/10.31390/gradschool_disstheses.5560
Analysis and visualization of H7 influenza using genomic, evolutionary and geographic information in a modular web service
Cladistics / May 21, 2012
Janies, D. A., Pomeroy, L. W., Aaronson, J. M., Handelman, S., Hardman, J., Kawalec, K., Bitterman, T., & Wheeler, W. C. (2012). Analysis and visualization of H7 influenza using genomic, evolutionary and geographic information in a modular web service. Cladistics, 28(5), 483–488. Portico. https://doi.org/10.1111/j.1096-0031.2012.00401.x
Applying software product line engineering in building web portals for supercomputing services
Proceedings of the 28th Annual ACM Symposium on Applied Computing / Mar 18, 2013
Diwan, P., Carey, P., Franz, E., Li, Y., Bitterman, T., Hudak, D. E., & Ramnath, R. (2013, March 18). Applying software product line engineering in building web portals for supercomputing services. Proceedings of the 28th Annual ACM Symposium on Applied Computing. https://doi.org/10.1145/2480362.2480694
Varney, Sir David (Robert), (born 11 May 1946), Chairman, Packt Ltd, since 2012
Who's Who / Dec 01, 2007
Varney, Sir David (Robert), (born 11 May 1946), Chairman, Packt Ltd, since 2012. (2007). In Who’s Who. Oxford University Press. https://doi.org/10.1093/ww/9780199540884.013.u41004
Enabling Data-Intensive Biomedical Science: Gaps, Opportunities, and Challenges
OMICS: A Journal of Integrative Biology / Apr 01, 2011
Hudak, D. E., Stredney, D., Calyam, P., Wohlever, K., Bitterman, T., Hittle, B., Kerwin, T., & Krishnamurthy, A. (2011). Enabling Data-Intensive Biomedical Science: Gaps, Opportunities, and Challenges. OMICS: A Journal of Integrative Biology, 15(4), 231–233. https://doi.org/10.1089/omi.2011.0017
Encyclopedias of DNA Elements for Plant Genomes
Advances in Genomic Sequence Analysis and Pattern Discovery / Jan 01, 2011
Lichtenberg, J., Yilmaz, A., Kurz, K., Liang, X., Nelson, C., Bitterman, T., Stockinger, E., Grotewold, E., & Welch, L. R. (2011). Encyclopedias of DNA Elements for Plant Genomes. In Science, Engineering, and Biology Informatics (pp. 159–178). WORLD SCIENTIFIC. https://doi.org/10.1142/9789814327732_0007
Offering Simulation Services Using a Hybrid Cloud/HPC Architecture
Simulation for Cyber-Physical Systems Engineering / Jan 01, 2020
Bitterman, T. (2020). Offering Simulation Services Using a Hybrid Cloud/HPC Architecture. In Simulation Foundations, Methods and Applications (pp. 259–282). Springer International Publishing. https://doi.org/10.1007/978-3-030-51909-4_10
Construction of Genomic Regulatory Encyclopedias: Strategies and Case Studies
2009 Ohio Collaborative Conference on Bioinformatics / Jun 01, 2009
Lichtenberg, J., Alam, M., Bitterman, T., Drews, F., Ecker, K., Elnitski, L., Evans, S., Geisler, M., Grotewold, E., Gu, D., Jacox, E., Kurz, K., Lee, S. S., Liang, X., Majmudar, P. M., Morris, P., Nelson, C., Stockinger, E., Welch, J. D., … Welch, L. R. (2009, June). Construction of Genomic Regulatory Encyclopedias: Strategies and Case Studies. 2009 Ohio Collaborative Conference on Bioinformatics. https://doi.org/10.1109/occbio.2009.9
<title>Alternative method for the connectionist learning of k-DNF expressions</title>
SPIE Proceedings / Jul 01, 1992
Bitterman, T. (1992). <title>Alternative method for the connectionist learning of k-DNF expressions</title> In D. W. Ruck (Ed.), Science of Artificial Neural Networks. SPIE. https://doi.org/10.1117/12.140102
Education
Louisiana State University
Ph.D., Computer Science / August, 1993
Kent State University
B.S.
Experience
Maastricht University
Senior Lecturer / February, 2023 — Present
Riverside Research
Machine Learning Engineer / August, 2020 — December, 2023
Wittenberg University
Assistant Professor / August, 2014 — August, 2020
Nationwide Insurance
Architect / January, 2014 — July, 2014
Ohio Supercomputer Center
Senior Software Engineer / February, 2008 — January, 2014
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