Dr. Matthew Woods, Ph.D.

Machine Learning Research Engineer with a PhD in Neural Networks and 15 years of applied ML industrial experience in Biotech, Medical Diagnostics, Automotive, and Robotics.

Research Expertise

Biomedical Engineering
Applied Microbiology and Biotechnology
Biotechnology
Bioengineering
Molecular Medicine
Pharmacology
Genetics
Infectious Diseases
Immunology and Allergy
Virology
Insect Science
Microbiology
Immunology
Biochemistry
Molecular Biology
Sensory Systems
Ophthalmology

Publications

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models
Nature Biotechnology
2010
A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data
The Pharmacogenomics Journal
2010
Comparative transcriptomics of extreme phenotypes of human HIV-1 infection and SIV infection in sooty mangabey and rhesus macaque
Journal of Clinical Investigation
2011
Higher Expression of Several Interferon-Stimulated Genes in HIV-1-Infected Females After Adjusting for the Level of Viral Replication
The Journal of Infectious Diseases
2013
Transcriptional Profiling of CD4 T Cells Identifies Distinct Subgroups of HIV-1 Elite Controllers
Journal of Virology
2011
Dysfunctional HIV-Specific CD8+ T Cell Proliferation Is Associated with Increased Caspase-8 Activity and Mediated by Necroptosis
Immunity
2014
High‐throughput measurement, correlation analysis, and machine‐learning predictions for pH and thermal stabilities of Pfizer‐generated antibodies
Protein Science
2011
An in silico analysis of microRNAs: Mining the miRNAome
Molecular BioSystems
2010
A genome-wide RNAi screen identifies novel targets of neratinib sensitivity leading to neratinib and paclitaxel combination drug treatments
Molecular BioSystems
2011
Probabilistic Neural Network for Predicting Resistance to HIV-Protease Inhibitor Nelfinavir
Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms
2014
Visual input statistics of natural time-varying images for different viewers, scenes, spectra and illuminations
Journal of Vision
2010
Higher expression of several interferon-stimulated genes in HIV-1-infected females after adjusting for the level of viral replication (P3039)
The Journal of Immunology
2013
Identification of CD8+ T cell host factors involved in HIV control
Retrovirology
2012

Education

Boston University

Ph.D., Cognitive and Neural Systems / May, 2007

Boston, Massachusetts, United States of America

University of Michigan–Ann Arbor

B.S., Double major: Mathematics and Physics / May, 1996

Ann Arbor, Michigan, United States of America
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