Work with thought leaders and academic experts in Infectious Diseases

Companies can greatly benefit from collaborating with academic researchers in the field of Infectious Diseases. Here are some reasons why:

Researchers on NotedSource with backgrounds in Infectious Diseases include Michael W Harman, Regan Hamel, Mohammad Imran Khan, Aayudh Das, Ph.D., Shariq Usmani, PhD, Odion Ikhimiukor, Dr. David Siderovski, Ph.D., Garrett A. Perchetti, Research Scientist - Virology, severine margeridon, Dr. Andrew Bernard, Ph.D., Jeffrey Townsend, and Samuel Ojima Adejoh.

Michael W Harman

East Greenwich, RI, Rhode Island, United States of America
7 Years Experience
Distinguished Subject Matter Expert & Leader in Medical Technologies.
Education

University of Connecticut

BS, Biomedical Engineering, Biofluid Mechanics Track / May, 2008

Storrs, Connecticut, United States of America

University of Connecticut

MS, Biomedical Engineering, Biomechanics Concentration / December, 2009

Storrs, Connecticut, United States of America

University of Arizona

Ph.D, Biochemistry, Molecular and Cellular Biology / December, 2015

Tucson, Arizona, United States of America
Experience

Brown University

Postdoctoral Research Fellow / May, 2016August, 2018

Critical lead asset driving preclinical collaborative cell biomechanics study managing 30 personnel between immunology, pathobiology, and experimental soft matter mechanics laboratories.

Rhode Island Hospital

Postdoctoral Research Fellow / May, 2016August, 2018

Critical lead asset driving preclinical collaborative cell biomechanics study managing 30 personnel between immunology, pathobiology, and experimental soft matter mechanics laboratories.

Ximedica

Research & Development Engineer / September, 2018October, 2019

Provided technical subject matter expertise to enhance the clinical performance of novel medical products being designed.

Research & Development Engineering Manager / October, 2019July, 2020

Grew a team of Research & Development Engineers out of our traditional designer, mechanical, and electrical engineering departments to form a novel team within the organization and supported each of their individual professional development needs.

Most Relevant Research Expertise
Infectious Diseases
Other Research Expertise (13)
Bacteria & Cell Bio-Physics
Biomechanics
Immunology
Microbiology
Parasitology
And 8 more
About
Highly skilled, energetic, and motivated professional empowered by over a decade of cross-disciplinary engineering and scientific applications experience. Presenting elegant solutions to prevalent biomedical challenges. Motivated by driving deliverable outcomes from complex research studies through effective leadership, active consulting work, and innovative problem-solving techniques. Seeking to make an immediate impact in a fast-paced biotechnology environment capitalizing on my advanced comprehension, continued professional growth, strategic product development expertise, and active network of personal connections across all areas of science, engineering, medicine, manufacturing and healthcare.
Most Relevant Publications (1+)

15 total publications

The Hybrid Histidine Kinase Hk1 Is Part of a Two-Component System That Is Essential for Survival of Borrelia burgdorferi in Feeding Ixodes scapularis Ticks

Infection and Immunity / Aug 01, 2011

Caimano, M. J., Kenedy, M. R., Kairu, T., Desrosiers, D. C., Harman, M., Dunham-Ems, S., Akins, D. R., Pal, U., & Radolf, J. D. (2011). The Hybrid Histidine Kinase Hk1 Is Part of a Two-Component System That Is Essential for Survival of Borrelia burgdorferi in Feeding Ixodes scapularis Ticks. Infection and Immunity, 79(8), 3117–3130. https://doi.org/10.1128/iai.05136-11

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Mohammad Imran Khan

College Park, Maryland, United States of America
3 Years Experience
Postdoctoral Associate at University of Maryland College Park in the Department of Nutrition and Food Science
Education

Kalinga Institute of Industrial Technology

PhD, School of Biotechnology / February, 2021

Bhubaneswar

Kalinga Institute of Industrial Technology

M.Sc., Biotechnology / July, 2014

Bhubaneswar
Experience

Columbia University Irving Medical Center, New York

Postdoctoral Research Scientist / August, 2021October, 2021

The George Washington University, Washington D.C.

Postdoctoral Associate / May, 2022March, 2023

University of Maryland College Park

Postdoctoral Associate / April, 2023Present

Most Relevant Research Expertise
Infectious Diseases
Other Research Expertise (22)
Biomedical Engineering
Nanotechology
Wound healing
Infection and Immunity
Bioengineering
And 17 more
About
Research work is focused on the formulation of nanoparticles encapsulated materials which could be useful for tissue engineering, stem cells, drug delivery and biomechanics to create biologically inspired tissue and organ constructs. Furthermore, 3D material may play significant role in the healing of complex tissues and organs in vitro and in vivo.
Most Relevant Publications (1+)

11 total publications

Ag@ZnO Nanoparticles Induce Antimicrobial Peptides and Promote Migration and Antibacterial Activity of Keratinocytes

ACS Infectious Diseases / Mar 29, 2021

Majhi, R. K., Mohanty, S., Khan, Md. I., Mishra, A., & Brauner, A. (2021). Ag@ZnO Nanoparticles Induce Antimicrobial Peptides and Promote Migration and Antibacterial Activity of Keratinocytes. ACS Infectious Diseases, 7(8), 2068–2072. https://doi.org/10.1021/acsinfecdis.0c00903

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Aayudh Das, Ph.D.

Boston, Massachusetts, United States of America
10 Years Experience
Scientist at Garuda therapeutics, specialized in Genomics and Computational Biology
Education

University of Vermont

PhD, Plant Biology / April, 2022

Burlington, Vermont, United States of America

Texas A&M University

Master's in Biochemistry, Biochemistry & Biophysics / May, 2016

College Station, Texas, United States of America

University of Calcutta

Master's, Biotechnology

Kolkata
Experience

Garuda therapeutics

Scientist / July, 2023Present

The Pennsylvania State University - University Park Campus

Postdoctoral Researcher / June, 2022July, 2023

University of Vermont

Research Assistant / May, 2016May, 2022

Most Relevant Research Expertise
Infectious Diseases
Other Research Expertise (14)
Transcriptomics
Genomics
Proteomics
Computational Biology
Metabolomics
And 9 more
About
I am a dedicated Scientist-I at Garuda Therapeutics, where I specialize in computational biology and genomics within the R&D department. My work primarily revolves around developing and optimizing pipelines for variant calling using Strelka2 and GATK4 with Whole Genome Sequencing (WGS) to identify oncogenes in human induced pluripotent stem cells (iPSCs). This involves extensive work in the qualification and validation of these pipelines for regulatory filings, as well as leveraging databases such as ClinVar, COSMIC, and DepMap to craft targeted oncogenes panels for deep sequencing. I also apply Next-Generation Sequencing (NGS) for downstream sequencing to validate CRISPR knockouts, including the identification and validation of CRISPR off-targets using techniques like rhAMPseq and Induce-seq. Additionally, my expertise extends to single-cell sequencing analysis and understanding structural variants with Optical Genome Mapping (Bionano). Prior to joining Garuda Therapeutics, I completed a postdoctoral fellowship in computational biology at Pennsylvania State University, where I honed my skills in identifying climate-adaptive variants and conducted Genome-Wide Association Studies (GWAS) to uncover resistance genes against parasites and other stressors. My academic journey began at the University of Vermont, where I explored abiotic stress resistance genes using transcriptomics and developed a robust understanding of RNA-seq data analysis, from assembly to gene annotation. My work is driven by a passion for leveraging computational and genomics tools to address pressing challenges in biology and healthcare, combining my rigorous academic training with a practical, solution-oriented approach to research and development.
Most Relevant Publications (1+)

10 total publications

A Quantitative Proteomics View on the Function of Qfhb1, a Major QTL for Fusarium Head Blight Resistance in Wheat

Pathogens / Jun 22, 2018

Eldakak, M., Das, A., Zhuang, Y., Rohila, J., Glover, K., & Yen, Y. (2018). A Quantitative Proteomics View on the Function of Qfhb1, a Major QTL for Fusarium Head Blight Resistance in Wheat. Pathogens, 7(3), 58. https://doi.org/10.3390/pathogens7030058

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Shariq Usmani, PhD

Boston, Massachusetts, United States of America
15 Years Experience
Massachusetts General Hospital, Harvard Medical School
Education

University of Konstanz

PhD, Molecular and Cell Biology / May, 2011

Konstanz

Harvard University

Postdoctoral fellow, Virology/Immunology / 2019

Cambridge, Massachusetts, United States of America
Experience

Cabaletta Bio

Scientific Director / 2024Present

I lead a research team in the preclinical R&D organization at Cabaletta bio. I directly manage a talented group of Senior Scientists, Scientists and Research Associates to spearhead and drive innovation in cell therapies and biologics in autoimmune disease indications.

Sana Biotechnology

Principal Scientist / 20222023

As a team lead, I led efforts to establish in vivo genome editing platform, vector design/engineering and optimization, with a broader goal to develop innovative and effective genomic medicine for unmet medical needs.

Zohdan Bio

Consultant / 2024Present

Providing strategic support for all aspects of preclinical, R&D programs in gene therapy, genome editing and virology and immunology space.

Most Relevant Research Expertise
Infectious Diseases
Other Research Expertise (9)
Microbiology
Virology
Immunology
Molecular Biology
Genetics
And 4 more
About
Dr. Shariq Usmani is scientific director at Cabaletta bio, a leader in cell therapy for autoimmune diseases (https://www.cabalettabio.com). He leads a research team in preclinical R&D organization at Cabaletta bio. He directly manage a talented group of Senior Scientists, Scientists and Research Associates to spearhead and drive innovation in cell therapies and biologics in autoimmune disease indications. <br> He is also serves as consultant at Zohdan Bio, where he provides strategic support for preclinical R&D programs focused on gene therapy, genome editing, and virology. With a deep foundation in oncology and biologics, Dr. Usmani has led groundbreaking work in both academia and industry, including his tenures at Sana Biotechnology, Harvard Medical School and Massachusetts General Hospital. He's led and spearheaded the development of innovative in vivo genome editing platforms, optimized viral vectors, and engineered cutting-edge reporter assays.
Most Relevant Publications (3+)

22 total publications

The efficiency of Vpx-mediated SAMHD1 antagonism does not correlate with the potency of viral control in HIV-2-infected individuals

Retrovirology / Mar 05, 2013

Yu, H., Usmani, S. M., Borch, A., Krämer, J., Stürzel, C. M., Khalid, M., Li, X., Krnavek, D., van der Ende, M. E., Osterhaus, A. D., Gruters, R. A., & Kirchhoff, F. (2013). The efficiency of Vpx-mediated SAMHD1 antagonism does not correlate with the potency of viral control in HIV-2-infected individuals. Retrovirology, 10(1). https://doi.org/10.1186/1742-4690-10-27

Cancer cells relax and resist cytotoxic attack

Immunity / May 01, 2021

Usmani, S. M., & Mempel, T. R. (2021). Cancer cells relax and resist cytotoxic attack. Immunity, 54(5), 853–855. https://doi.org/10.1016/j.immuni.2021.04.017

HIV-enhancing Amyloids Are Prevalent in Fresh Semen and Are a Determinant for Semen's Ability to Enhance HIV Infection: Relevance for HIV Transmission

AIDS Research and Human Retroviruses / Oct 01, 2014

Usmani, S., Liu, H., Pilcher, C. D., Witkowska, H. E., Kirchhoff, F., Greene, W. C., Münch, J., & Roan, N. R. (2014). HIV-enhancing Amyloids Are Prevalent in Fresh Semen and Are a Determinant for Semen’s Ability to Enhance HIV Infection: Relevance for HIV Transmission. AIDS Research and Human Retroviruses, 30(S1), A183–A184. https://doi.org/10.1089/aid.2014.5392.abstract

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Odion Ikhimiukor

Albany, New York, United States of America
6 Years Experience
Postdoctoral Research Scientist at University at Albany, State University of New York
Education

University of Ibadan

PhD Microbiology, Bacterial genomics, Bioinformatics, Microbiology

Ibadan

University of Ibadan

Master of Science (M. Sc.), Environmental Microbiology / April, 2015

Ibadan

University of Abuja

Bachelor of Science (B.Sc.), Microbiology / March, 2011

Abuja
Experience

University at Albany, State University of New York

Postdoctoral Associate

National Institute for Pharmaceutical Research and Development

FCT Emergency Services, Asokoro District Hospital

Most Relevant Research Expertise
Infectious Diseases
Other Research Expertise (23)
Pathogen Genomics
Bioinformatics
Molecular Biology
Epidemiology
Environmental Microbiology
And 18 more
About
A postdoctoral research scientist with over 9 years experience in bacterial genomics, microbiology, bioinformatics and antimicrobial resistance research. I’m seeking a Research Scientist or Epidemiologist role at public health genomics laboratories and I am the perfect fit for these roles because I have the following skills: molecular biology, research & development, strategic planning, project management, documentation, outbreak investigation, and cross-functional collaboration skills. I have leveraged my skills to work in a collaborative team-oriented environment to accomplish project goals related to examining the evolution of antimicrobial resistance as evidenced by over 7 national and international collaborations including the New York State Department of Health. I am also a proactive problem-solver adopting innovative and scientific thinking strategies in molecular biology to fulfill project objectives resulting in scientific discoveries including uncovering 1 novel hotspot for the dissemination of resistance in bacteria. I have gained mentorship expertise in promoting data reproducibility, and innovative research methodology in antimicrobial resistance research as evidenced by mentoring 10 professionals on evolutionary genomics, epidemiological statistics, and antimicrobial stewardship. I have also worked collaboratively with a team to apply pathogen genomics, bioinformatics, and leadership skills as demonstrated by working with over 10 highly collaborative teams including the Africa CDC. In addition, I have the following qualifications: Cross-functional collaborator and experience elucidating methods and frequencies of horizontal gene transfer and antimicrobial resistance spread in bacterial species, as demonstrated by 26 peer-reviewed publications including 1 in Nature Microbiology. Experience in leading and managing project details and tasks as evidenced by over 20 projects in pathogen genomics, epidemiology, antimicrobial resistance surveillance, and global health. Astute communication skills in bacterial epidemiology and antimicrobial resistance research resulting in 20 presentations and 6 travel awards to deliver such presentations, including the Bill and Melinda Gates Foundation. I want to serve an organization that prizes community, collaboration and humility among its employees. I’m excited to be on a team built around impact, innovation and a strong, positive reputation. I know I will thrive at a company where responsibility is valued, as well as self-improvement and time-management. I want to be a part of an organization that infuses growth into their brand, culture and market and who I can help make a difference in the world.
Most Relevant Publications (3+)

27 total publications

Phylogenetic lineages and antimicrobial resistance determinants of clinical Klebsiella oxytoca spanning local to global scales

Microbiology Spectrum / Oct 17, 2023

Ikhimiukor, O. O., Souza, S. S. R., Akintayo, I. J., Marcovici, M. M., Workman, A., Martin, I. W., & Andam, C. P. (2023). Phylogenetic lineages and antimicrobial resistance determinants of clinical Klebsiella oxytoca spanning local to global scales. Microbiology Spectrum, 11(5). https://doi.org/10.1128/spectrum.00549-23

A snapshot survey of antimicrobial resistance in food-animals in low and middle-income countries

One Health / Jun 01, 2023

Ikhimiukor, O. O., & Okeke, I. N. (2023). A snapshot survey of antimicrobial resistance in food-animals in low and middle-income countries. One Health, 16, 100489. https://doi.org/10.1016/j.onehlt.2023.100489

Genomic characterization of invasive typhoidal and non-typhoidal Salmonella in southwestern Nigeria

PLOS Neglected Tropical Diseases / Aug 26, 2022

Ikhimiukor, O. O., Oaikhena, A. O., Afolayan, A. O., Fadeyi, A., Kehinde, A., Ogunleye, V. O., Aboderin, A. O., Oduyebo, O. O., Elikwu, C. J., Odih, E. E., Komolafe, I., Argimón, S., Egwuenu, A., Adebiyi, I., Sadare, O. A., Okwor, T., Kekre, M., Underwood, A., Ihekweazu, C., … Okeke, I. N. (2022). Genomic characterization of invasive typhoidal and non-typhoidal Salmonella in southwestern Nigeria. PLOS Neglected Tropical Diseases, 16(8), e0010716. https://doi.org/10.1371/journal.pntd.0010716

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Dr. David Siderovski, Ph.D.

Fort Worth
25 Years Experience
Professor of Computational Pharmacology; Chair of HSC SBS Dept. of Pharmacology & Neuroscience
Education

University of Toronto

Ph.D., Medical Biophysics / November, 1997

Toronto, Ontario, Canada
Experience

University of North Carolina at Chapel Hill

Professor / January, 1999June, 2012

West Virginia University School of Medicine

E.J. Van Liere Endowed Medicine Professor and Chairman / July, 2012February, 2020

Chair of the Dept. of Physiology and Pharmacology

University of North Texas Health Science Center

Professor & Chair / March, 2020Present

Most Relevant Research Expertise
Infectious Diseases
Other Research Expertise (25)
Regulator of G protein Signaling (RGS) proteins
Pharmacology
Molecular Biology
Cellular and Molecular Neuroscience
Molecular Medicine
And 20 more
About
Dr. David Siderovski is a renowned scientist and academic, with a career spanning over two decades. He received his Ph.D. in Medical Biophysics from the University of Toronto in 1997, where he specialized in signal transduction and cellular signaling pathways. After completing his doctorate, Dr. Siderovski held various faculty positions at prestigious universities, including the University of North Carolina at Chapel Hill, West Virginia University School of Medicine, and the University of North Texas Health Science Center. At these institutions, Dr. Siderovski has made significant contributions to the field of pharmacology through his research on G protein-coupled receptors (GPCRs) and RGS proteins, which are key regulators of GPCR cellular signaling. His work has helped to advance the understanding of RGS proteins and their roles in various diseases, including cancer, cardiovascular disorders, and neurological disorders. In addition to his research, Dr. Siderovski is also a dedicated educator and mentor. He has taught and mentored numerous undergraduate, graduate, and medical students, and has served as a mentor for postdoctoral fellows and junior faculty members. He is known for his passion and enthusiasm for science and his ability to inspire and guide the next generation of scientists. Dr. Siderovski has received numerous awards and honors for his contributions to the scientific community. He was the recipient of the Abel Award in 2004 from the American Society of Pharmacology & Experimental Therapeutics for his pioneering discoveries of the RGS proteins and the GoLoco motif. He has also served on editorial boards of several scientific journals (including a decade at *J.Biol.Chem.*) and has been a member of various scientific committees, NIH study section panels, and pharma/biotech advisory boards, including for Inspire, Wyeth, and BellBrook Labs. Overall, Dr. David Siderovski is a highly accomplished and respected scientist and educator, whose research has had a significant impact on the field of pharmacology. His dedication and passion for science continue to inspire and influence the next generation of researchers in this field.
Most Relevant Publications (1+)

94 total publications

The Mitochondrial Proteins NLRX1 and TUFM Form a Complex that Regulates Type I Interferon and Autophagy

Immunity / Jun 01, 2012

Lei, Y., Wen, H., Yu, Y., Taxman, D. J., Zhang, L., Widman, D. G., Swanson, K. V., Wen, K.-W., Damania, B., Moore, C. B., Giguère, P. M., Siderovski, D. P., Hiscott, J., Razani, B., Semenkovich, C. F., Chen, X., & Ting, J. P.-Y. (2012). The Mitochondrial Proteins NLRX1 and TUFM Form a Complex that Regulates Type I Interferon and Autophagy. Immunity, 36(6), 933–946. https://doi.org/10.1016/j.immuni.2012.03.025

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Garrett A. Perchetti, Research Scientist - Virology

New York
9 Years Experience
Research Scientist and MD Candidate in virology with publications on infectious diseases, laboratory medicine, viral genetics, and clinical medicine
Education

University of Washington

BS, BA, Microbiology; Art History

Seattle, Washington, United States of America

Ross University School of Medicine

MD, Infectious Diseases / April, 2025 (anticipated)

Bridgetown

Harvard University

SSP, Psychology

Cambridge, Massachusetts, United States of America
Experience

University of Washington

Research Scientist / 2015Present

Most Relevant Research Expertise
Infectious Diseases
Other Research Expertise (14)
Virology
Microbiology
SARS-CoV-2
COVID-19
Microbiology (medical)
And 9 more
About
Garrett A. Perchetti is a highly accomplished research scientist in the field of virology. He received a Bachelor of Science in Microbiology and a Bachelor of Arts in Art History from the University of Washington. His interest in both science and the arts led him to pursue a career in virology, where he could combine his passion for understanding the natural world with his creative thinking skills. After completing his undergraduate studies, Garrett continued his education by earning a Medical Degree from Ross University School of Medicine in 2025. During his time in medical school, he developed a keen interest in virology and infectious diseases, which ultimately led him to specialize in this field. Garrett's educational background is complemented by his extensive experience as a research scientist. He has worked at the University of Washington School of Medicine, where he has conducted groundbreaking research on various types of viruses. His work has been published in numerous scientific journals, and he has presented his findings at international conferences. Garrett's contributions to the field of virology have been widely recognized, and he has received several awards and accolades for his work. He is known for his meticulous attention to detail, innovative thinking, and ability to collaborate effectively with other researchers. In his free time, Garrett enjoys painting, hiking, and traveling. He is also passionate about raising awareness about the importance of vaccinations and promoting public health initiatives. With his exceptional education and extensive experience, Garrett A. Perchetti is a valuable asset to the field of virology and will continue to make significant contributions in the future.
Most Relevant Publications (12+)

28 total publications

Validation of SARS-CoV-2 detection across multiple specimen types

Journal of Clinical Virology / Jul 01, 2020

Perchetti, G. A., Nalla, A. K., Huang, M.-L., Zhu, H., Wei, Y., Stensland, L., Loprieno, M. A., Jerome, K. R., & Greninger, A. L. (2020). Validation of SARS-CoV-2 detection across multiple specimen types. Journal of Clinical Virology, 128, 104438. https://doi.org/10.1016/j.jcv.2020.104438

20. Risk Factors for Breakthrough Cytomegalovirus (CMV) Infection and De Novo Resistance in Hematopoietic Cell Transplantation (HCT) Recipients Receiving Letermovir Prophylaxis

Open Forum Infectious Diseases / Nov 01, 2021

Zamora, D., Perchetti, G., Biernacki, M., Xie, H., Castor, J. L., Joncas-schronce, L., Blazevic, R., Leisenring, W., Huang, M.-L., Jerome, K., Martin, P. J., Boeckh, M., & Greninger, A. L. (2021). 20. Risk Factors for Breakthrough Cytomegalovirus (CMV) Infection and De Novo Resistance in Hematopoietic Cell Transplantation (HCT) Recipients Receiving Letermovir Prophylaxis. Open Forum Infectious Diseases, 8(Supplement_1), S13–S14. https://doi.org/10.1093/ofid/ofab466.020

Rapid and accurate identification of SARS-CoV-2 Omicron variants using droplet digital PCR (RT-ddPCR)

Journal of Clinical Virology / Sep 01, 2022

Mills, M. G., Hajian, P., Bakhash, S. M., Xie, H., Mantzke, D., Zhu, H., Perchetti, G. A., Huang, M.-L., Pepper, G., Jerome, K. R., Roychoudhury, P., & Greninger, A. L. (2022). Rapid and accurate identification of SARS-CoV-2 Omicron variants using droplet digital PCR (RT-ddPCR). Journal of Clinical Virology, 154, 105218. https://doi.org/10.1016/j.jcv.2022.105218

Specific allelic discrimination of N501Y and other SARS‐CoV‐2 mutations by ddPCR detects B.1.1.7 lineage in Washington State

Journal of Medical Virology / Jul 03, 2021

Perchetti, G. A., Zhu, H., Mills, M. G., Shrestha, L., Wagner, C., Bakhash, S. M., Lin, M. J., Xie, H., Huang, M., Mathias, P., Bedford, T., Jerome, K. R., Greninger, A. L., & Roychoudhury, P. (2021). Specific allelic discrimination of N501Y and other SARS‐CoV‐2 mutations by ddPCR detects B.1.1.7 lineage in Washington State. Journal of Medical Virology, 93(10), 5931–5941. Portico. https://doi.org/10.1002/jmv.27155

A SARS-CoV-2 Nucleocapsid Variant that Affects Antigen Test Performance

Journal of Clinical Virology / Aug 01, 2021

Bourassa, L., Perchetti, G. A., Phung, Q., Lin, M. J., Mills, M. G., Roychoudhury, P., Harmon, K. G., Reed, J. C., & Greninger, A. L. (2021). A SARS-CoV-2 Nucleocapsid Variant that Affects Antigen Test Performance. Journal of Clinical Virology, 141, 104900. https://doi.org/10.1016/j.jcv.2021.104900

Performance characteristics of the Abbott Alinity m SARS-CoV-2 assay

Journal of Clinical Virology / Jul 01, 2021

Perchetti, G. A., Pepper, G., Shrestha, L., LaTurner, K., Yae Kim, D., Huang, M.-L., Jerome, K. R., & Greninger, A. L. (2021). Performance characteristics of the Abbott Alinity m SARS-CoV-2 assay. Journal of Clinical Virology, 140, 104869. https://doi.org/10.1016/j.jcv.2021.104869

Human Metapneumovirus Infection and Genotyping of Infants in Rural Nepal

Journal of the Pediatric Infectious Diseases Society / Nov 02, 2020

Perchetti, G. A., Wilcox, N., Chu, H. Y., Katz, J., Khatry, S. K., LeClerq, S. C., Tielsch, J. M., Jerome, K. R., Englund, J. A., & Kuypers, J. (2020). Human Metapneumovirus Infection and Genotyping of Infants in Rural Nepal. Journal of the Pediatric Infectious Diseases Society, 10(4), 408–416. https://doi.org/10.1093/jpids/piaa118

Pooling of SARS-CoV-2 samples to increase molecular testing throughput

Journal of Clinical Virology / Oct 01, 2020

Perchetti, G. A., Sullivan, K.-W., Pepper, G., Huang, M.-L., Breit, N., Mathias, P., Jerome, K. R., & Greninger, A. L. (2020). Pooling of SARS-CoV-2 samples to increase molecular testing throughput. Journal of Clinical Virology, 131, 104570. https://doi.org/10.1016/j.jcv.2020.104570

Multiplexing primer/probe sets for detection of SARS-CoV-2 by qRT-PCR

Journal of Clinical Virology / Aug 01, 2020

Perchetti, G. A., Nalla, A. K., Huang, M.-L., Jerome, K. R., & Greninger, A. L. (2020). Multiplexing primer/probe sets for detection of SARS-CoV-2 by qRT-PCR. Journal of Clinical Virology, 129, 104499. https://doi.org/10.1016/j.jcv.2020.104499

Phylogenetic characterization of rhinoviruses from infants in Sarlahi, Nepal

Journal of Medical Virology / Aug 21, 2019

Kuypers, J., Perchetti, G. A., Chu, H. Y., Newman, K. L., Katz, J., Khatry, S. K., LeClerq, S. C., Jerome, K. R., Tielsch, J. M., & Englund, J. A. (2019). Phylogenetic characterization of rhinoviruses from infants in Sarlahi, Nepal. Journal of Medical Virology, 91(12), 2108–2116. Portico. https://doi.org/10.1002/jmv.25563

2626. Rhinovirus in Children Presenting to the Emergency Department: Role of Viral Load in Disease Severity and Co-Infections

Open Forum Infectious Diseases / Oct 01, 2019

Waghmare, A., Strelitz, B., Lacombe, K., Perchetti, G., Nalla, A., Rha, B., Midgley, C., Lively, J. Y., Klein, E. J., Kuypers, J., & Englund, J. A. (2019). 2626. Rhinovirus in Children Presenting to the Emergency Department: Role of Viral Load in Disease Severity and Co-Infections. Open Forum Infectious Diseases, 6(Supplement_2), S915–S916. https://doi.org/10.1093/ofid/ofz360.2304

Large, Stable, Contemporary Interspecies Recombination Events in Circulating Human Herpes Simplex Viruses

The Journal of Infectious Diseases / Apr 23, 2019

Casto, A. M., Roychoudhury, P., Xie, H., Selke, S., Perchetti, G. A., Wofford, H., Huang, M.-L., Verjans, G. M. G. M., Gottlieb, G. S., Wald, A., Jerome, K. R., Koelle, D. M., Johnston, C., & Greninger, A. L. (2019). Large, Stable, Contemporary Interspecies Recombination Events in Circulating Human Herpes Simplex Viruses. The Journal of Infectious Diseases. https://doi.org/10.1093/infdis/jiz199

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Dr. Andrew Bernard, Ph.D.

Ann Arbor, Michigan, United States of America
13 Years Experience
Ph.D. in Anthropology, University of Michigan
Education

University of Michigan–Ann Arbor

Ph.D., Anthropology / January, 2024

Ann Arbor, Michigan, United States of America

University of Michigan–Ann Arbor

M.A., Anthropology / May, 2018

Ann Arbor, Michigan, United States of America

Bates College

B.A., Biology / May, 2011

Lewiston, Maine, United States of America
Experience

University of Michigan

Graduate Student Instructor / September, 2016December, 2022

Created and taught first-year writing seminar ENG 125: “Writing Climate Change"; Assistant instructor for eight courses in statistical analyses and modeling, primate social behavior, evolutionary biology, biological anthropology, behavioral ecology, and vertebrate evolution

Lukuru Foundation

Co-coordinator and research consultant / August, 2011August, 2015

Designed and implemented monitoring protocol for African Grey Parrots, including 8 months in the field monitoring populations and establishing community partnerships in and around the Lomami National Park ; Fundraised over $9000 for the project; Fostered collaborations and established partnerships between community members, local and regional governments, and village leadership; Conducted general exploratory bird surveys using song recordings and mist netting

Gorilla Rehabilitation and Conservation Education Center

Research Consultant / January, 2015March, 2015

Focus on gorilla behavior, captive management, community outreach, conservation education; Contracted research photographer

Most Relevant Research Expertise
Infectious Diseases
Other Research Expertise (12)
primatology
conservation biology
climate change biology
tropical ecology
biological anthropology
And 7 more
About
Hi! I'm Andrew, a recent Ph.D. graduate in Anthropology from the University of Michigan. I have experience in statistical modeling and data visualization in R, climate change, tropical forest ecology, field research, conservation, and environmental science. My professional strengths include organizational skills, being a quick learner, critical thinking, adaptability, science communication, and both independent and collaborative work. For fun, I love to scuba dive, hike, woodwork, read, and do puzzles!
Most Relevant Publications (1+)

10 total publications

Coincident Tick Infestations in the Nostrils of Wild Chimpanzees and a Human in Uganda

The American Journal of Tropical Medicine and Hygiene / Nov 06, 2013

Hamer, S. A., Donovan, R. M., Hartel, J. A., Wrangham, R. W., Otali, E., Bernard, A. B., & Goldberg, T. L. (2013). Coincident Tick Infestations in the Nostrils of Wild Chimpanzees and a Human in Uganda. The American Journal of Tropical Medicine and Hygiene, 89(5), 924–927. https://doi.org/10.4269/ajtmh.13-0081

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Jeffrey Townsend

New Haven, CT, Connecticut, United States of America
29 Years Experience
Professor of Biostatistics and Ecology & Evolutionary Biology
Education

Harvard University

Ph.D., Organismic and Evolutionary Biology / May, 2002

Cambridge, Massachusetts, United States of America

Brown University

Sc.B., Biology / May, 1994

Providence, Rhode Island, United States of America
Experience

Yale University

Professor / July, 2018Present

Elihu Professor of Biostatistics / July, 2018Present

Elihu Associate Professor of Biostatistics / July, 2017June, 2018

Associate Professor / July, 2013June, 2018

Associate Professor / July, 2013June, 2017

Assistant Professor / July, 2006June, 2013

University of Connecticut

Assistant Professor / August, 2004May, 2006

St. Ann's School

Teacher / September, 1994June, 1997

Most Relevant Research Expertise
Infectious Diseases
Other Research Expertise (52)
Evolutionary Genomics
Microbiology
Genetics
Cell Biology
Ecology, Evolution, Behavior and Systematics
And 47 more
About
Jeffrey Townsend is a Professor of Organismic and Evolutionary Biology at Yale University. He received his Ph.D. from Harvard University in 2002 and his Sc.B. from Brown University in 1994. He has been a teacher at St. Ann's School and an Assistant Professor at the University of Connecticut. He is currently the Elihu Professor of Biostatistics at Yale University.
Most Relevant Publications (26+)

207 total publications

Horizontal gene transfer, genome innovation and evolution

Nature Reviews Microbiology / Aug 01, 2005

Gogarten, J. P., & Townsend, J. P. (2005). Horizontal gene transfer, genome innovation and evolution. Nature Reviews Microbiology, 3(9), 679–687. https://doi.org/10.1038/nrmicro1204

The durability of immunity against reinfection by SARS-CoV-2: a comparative evolutionary study

The Lancet Microbe / Dec 01, 2021

Townsend, J. P., Hassler, H. B., Wang, Z., Miura, S., Singh, J., Kumar, S., Ruddle, N. H., Galvani, A. P., & Dornburg, A. (2021). The durability of immunity against reinfection by SARS-CoV-2: a comparative evolutionary study. The Lancet Microbe, 2(12), e666–e675. https://doi.org/10.1016/s2666-5247(21)00219-6

Potential effectiveness of long-acting injectable pre-exposure prophylaxis for HIV prevention in men who have sex with men: a modelling study

The Lancet HIV / Sep 01, 2018

Marshall, B. D. L., Goedel, W. C., King, M. R. F., Singleton, A., Durham, D. P., Chan, P. A., Townsend, J. P., & Galvani, A. P. (2018). Potential effectiveness of long-acting injectable pre-exposure prophylaxis for HIV prevention in men who have sex with men: a modelling study. The Lancet HIV, 5(9), e498–e505. https://doi.org/10.1016/s2352-3018(18)30097-3

Infection by SARS‐CoV‐2 with alternate frequencies of mRNA vaccine boosting

Journal of Medical Virology / Jan 18, 2023

Townsend, J. P., Hassler, H. B., & Dornburg, A. (2023). Infection by SARS‐CoV‐2 with alternate frequencies of mRNA vaccine boosting. Journal of Medical Virology, 95(2). Portico. https://doi.org/10.1002/jmv.28461

Dogs and pigs are transport hosts of Necator americanus : Molecular evidence for a zoonotic mechanism of human hookworm transmission in Ghana

Zoonoses and Public Health / Jun 11, 2020

Boyko, R. H., Marie Harrison, L., Humphries, D., Galvani, A. P., Townsend, J. P., Otchere, J., Wilson, M. D., & Cappello, M. (2020). Dogs and pigs are transport hosts of Necator americanus  : Molecular evidence for a zoonotic mechanism of human hookworm transmission in Ghana. Zoonoses and Public Health, 67(5), 474–483. Portico. https://doi.org/10.1111/zph.12708

Implementation of Syringe Services Programs to Prevent Rapid Human Immunodeficiency Virus Transmission in Rural Counties in the United States: A Modeling Study

Clinical Infectious Diseases / May 30, 2019

Goedel, W. C., King, M. R. F., Lurie, M. N., Galea, S., Townsend, J. P., Galvani, A. P., Friedman, S. R., & Marshall, B. D. L. (2019). Implementation of Syringe Services Programs to Prevent Rapid Human Immunodeficiency Virus Transmission in Rural Counties in the United States: A Modeling Study. Clinical Infectious Diseases, 70(6), 1096–1102. https://doi.org/10.1093/cid/ciz321

The critical importance of retention in HIV prevention

The Lancet HIV / Sep 01, 2018

Golub, S. A., & Enemchukwu, C. U. (2018). The critical importance of retention in HIV prevention. The Lancet HIV, 5(9), e475–e476. https://doi.org/10.1016/s2352-3018(18)30130-9

Genomic Comparison Among Global Isolates of L. interrogans Serovars Copenhageni and Icterohaemorrhagiae Identified Natural Genetic Variation Caused by an Indel

Frontiers in Cellular and Infection Microbiology / Jun 19, 2018

Santos, L. A., Adhikarla, H., Yan, X., Wang, Z., Fouts, D. E., Vinetz, J. M., Alcantara, L. C. J., Hartskeerl, R. A., Goris, M. G. A., Picardeau, M., Reis, M. G., Townsend, J. P., Zhao, H., Ko, A. I., & Wunder, E. A. (2018). Genomic Comparison Among Global Isolates of L. interrogans Serovars Copenhageni and Icterohaemorrhagiae Identified Natural Genetic Variation Caused by an Indel. Frontiers in Cellular and Infection Microbiology, 8. https://doi.org/10.3389/fcimb.2018.00193

Lvr, a Signaling System That Controls Global Gene Regulation and Virulence in Pathogenic Leptospira

Frontiers in Cellular and Infection Microbiology / Feb 23, 2018

Adhikarla, H., Wunder, E. A., Mechaly, A. E., Mehta, S., Wang, Z., Santos, L., Bisht, V., Diggle, P., Murray, G., Adler, B., Lopez, F., Townsend, J. P., Groisman, E., Picardeau, M., Buschiazzo, A., & Ko, A. I. (2018). Lvr, a Signaling System That Controls Global Gene Regulation and Virulence in Pathogenic Leptospira. Frontiers in Cellular and Infection Microbiology, 8. https://doi.org/10.3389/fcimb.2018.00045

Cost-effectiveness of next-generation vaccines: The case of pertussis

Vaccine / Jun 01, 2016

Fitzpatrick, M. C., Wenzel, N. S., Scarpino, S. V., Althouse, B. M., Atkins, K. E., Galvani, A. P., & Townsend, J. P. (2016). Cost-effectiveness of next-generation vaccines: The case of pertussis. Vaccine, 34(29), 3405–3411. https://doi.org/10.1016/j.vaccine.2016.04.010

Retrospective Analysis of the 2014–2015 Ebola Epidemic in Liberia

The American Journal of Tropical Medicine and Hygiene / Apr 06, 2016

Atkins, K. E., Nyenswah, T. G., Galvani, A. P., Bawo, L., Yamin, D., Altice, F. L., Fallah, M., Medlock, J., Skrip, L., Wenzel, N. S., Ndeffo-Mbah, M. L., Pandey, A., & Townsend, J. (2016). Retrospective Analysis of the 2014–2015 Ebola Epidemic in Liberia. The American Journal of Tropical Medicine and Hygiene, 94(4), 833–839. https://doi.org/10.4269/ajtmh.15-0328

Quantifying Transmission ofClostridium difficilewithin and outside Healthcare Settings

Emerging Infectious Diseases / Apr 01, 2016

Durham, D. P., Olsen, M. A., Dubberke, E. R., Galvani, A. P., & Townsend, J. P. (2016). Quantifying Transmission ofClostridium difficilewithin and outside Healthcare Settings. Emerging Infectious Diseases, 22(4), 608–616. https://doi.org/10.3201/eid2204.150455

Determinants of Human African Trypanosomiasis Elimination via Paratransgenesis

PLOS Neglected Tropical Diseases / Mar 08, 2016

Gilbert, J. A., Medlock, J., Townsend, J. P., Aksoy, S., Ndeffo Mbah, M., & Galvani, A. P. (2016). Determinants of Human African Trypanosomiasis Elimination via Paratransgenesis. PLOS Neglected Tropical Diseases, 10(3), e0004465. https://doi.org/10.1371/journal.pntd.0004465

The Impact of Enhanced Screening and Treatment on Hepatitis C in the United States

Clinical Infectious Diseases / Nov 30, 2015

Durham, D. P., Skrip, L. A., Bruce, R. D., Vilarinho, S., Elbasha, E. H., Galvani, A. P., & Townsend, J. P. (2015). The Impact of Enhanced Screening and Treatment on Hepatitis C in the United States. Clinical Infectious Diseases, 62(3), 298–304. https://doi.org/10.1093/cid/civ894

Optimizing age of cytomegalovirus screening and vaccination to avert congenital disease in the US

Vaccine / Jan 01, 2016

Alfaro-Murillo, J. A., Townsend, J. P., & Galvani, A. P. (2016). Optimizing age of cytomegalovirus screening and vaccination to avert congenital disease in the US. Vaccine, 34(2), 225–229. https://doi.org/10.1016/j.vaccine.2015.11.039

Quantitative analyses and modelling to support achievement of the 2020 goals for nine neglected tropical diseases

Parasites &amp; Vectors / Dec 01, 2015

Hollingsworth, T. D., Adams, E. R., Anderson, R. M., Atkins, K., Bartsch, S., Basáñez, M.-G., Behrend, M., Blok, D. J., Chapman, L. A. C., Coffeng, L., Courtenay, O., Crump, R. E., de Vlas, S. J., Dobson, A., Dyson, L., Farkas, H., Galvani, A. P., Gambhir, M., … Zoueva, A. (2015). Quantitative analyses and modelling to support achievement of the 2020 goals for nine neglected tropical diseases. Parasites &amp; Vectors, 8(1). https://doi.org/10.1186/s13071-015-1235-1

Harnessing Case Isolation and Ring Vaccination to Control Ebola

PLOS Neglected Tropical Diseases / May 29, 2015

Wells, C., Yamin, D., Ndeffo-Mbah, M. L., Wenzel, N., Gaffney, S. G., Townsend, J. P., Meyers, L. A., Fallah, M., Nyenswah, T. G., Altice, F. L., Atkins, K. E., & Galvani, A. P. (2015). Harnessing Case Isolation and Ring Vaccination to Control Ebola. PLOS Neglected Tropical Diseases, 9(5), e0003794. https://doi.org/10.1371/journal.pntd.0003794

Epidemiological and Viral Genomic Sequence Analysis of the 2014 Ebola Outbreak Reveals Clustered Transmission

Clinical Infectious Diseases / Dec 15, 2014

Scarpino, S. V., Iamarino, A., Wells, C., Yamin, D., Ndeffo-Mbah, M., Wenzel, N. S., Fox, S. J., Nyenswah, T., Altice, F. L., Galvani, A. P., Meyers, L. A., & Townsend, J. P. (2014). Epidemiological and Viral Genomic Sequence Analysis of the 2014 Ebola Outbreak Reveals Clustered Transmission. Clinical Infectious Diseases, 60(7), 1079–1082. https://doi.org/10.1093/cid/ciu1131

Correction: Harnessing Case Isolation and Ring Vaccination to Control Ebola

PLOS Neglected Tropical Diseases / Jun 24, 2015

Wells, C., Yamin, D., Ndeffo-Mbah, M. L., Wenzel, N., Gaffney, S. G., Townsend, J. P., Meyers, L. A., Fallah, M., Nyenswah, T. G., Altice, F. L., Atkins, K. E., & Galvani, A. P. (2015). Correction: Harnessing Case Isolation and Ring Vaccination to Control Ebola. PLOS Neglected Tropical Diseases, 9(6), e0003888. https://doi.org/10.1371/journal.pntd.0003888

Probabilistic uncertainty analysis of epidemiological modeling to guide public health intervention policy

Epidemics / Mar 01, 2014

Gilbert, J. A., Meyers, L. A., Galvani, A. P., & Townsend, J. P. (2014). Probabilistic uncertainty analysis of epidemiological modeling to guide public health intervention policy. Epidemics, 6, 37–45. https://doi.org/10.1016/j.epidem.2013.11.002

Potential Cost-Effectiveness of Schistosomiasis Treatment for Reducing HIV Transmission in Africa – The Case of Zimbabwean Women

PLoS Neglected Tropical Diseases / Aug 01, 2013

Ndeffo Mbah, M. L., Poolman, E. M., Atkins, K. E., Orenstein, E. W., Meyers, L. A., Townsend, J. P., & Galvani, A. P. (2013). Potential Cost-Effectiveness of Schistosomiasis Treatment for Reducing HIV Transmission in Africa – The Case of Zimbabwean Women. PLoS Neglected Tropical Diseases, 7(8), e2346. https://doi.org/10.1371/journal.pntd.0002346

Optimal targeting of seasonal influenza vaccination toward younger ages is robust to parameter uncertainty

Vaccine / Jun 01, 2013

Ndeffo Mbah, M. L., Medlock, J., Meyers, L. A., Galvani, A. P., & Townsend, J. P. (2013). Optimal targeting of seasonal influenza vaccination toward younger ages is robust to parameter uncertainty. Vaccine, 31(30), 3079–3089. https://doi.org/10.1016/j.vaccine.2013.04.052

Reevaluation of Epidemiological Data Demonstrates That It Is Consistent With Cross-Immunity Among Human Papillomavirus Types

Journal of Infectious Diseases / Aug 07, 2012

Durham, D. P., Poolman, E. M., Ibuka, Y., Townsend, J. P., & Galvani, A. P. (2012). Reevaluation of Epidemiological Data Demonstrates That It Is Consistent With Cross-Immunity Among Human Papillomavirus Types. Journal of Infectious Diseases, 206(8), 1291–1298. https://doi.org/10.1093/infdis/jis494

Potential for Rabies Control through Dog Vaccination in Wildlife-Abundant Communities of Tanzania

PLoS Neglected Tropical Diseases / Aug 21, 2012

Fitzpatrick, M. C., Hampson, K., Cleaveland, S., Meyers, L. A., Townsend, J. P., & Galvani, A. P. (2012). Potential for Rabies Control through Dog Vaccination in Wildlife-Abundant Communities of Tanzania. PLoS Neglected Tropical Diseases, 6(8), e1796. https://doi.org/10.1371/journal.pntd.0001796

Retrospective evidence for a biological cost of vancomycin resistance determinants in the absence of glycopeptide selective pressures

Journal of Antimicrobial Chemotherapy / Jan 07, 2011

Johnsen, P. J., Townsend, J. P., Bohn, T., Simonsen, G. S., Sundsfjord, A., & Nielsen, K. M. (2011). Retrospective evidence for a biological cost of vancomycin resistance determinants in the absence of glycopeptide selective pressures. Journal of Antimicrobial Chemotherapy, 66(3), 608–610. https://doi.org/10.1093/jac/dkq512

Factors affecting the reversal of antimicrobial-drug resistance

The Lancet Infectious Diseases / Jun 01, 2009

Johnsen, P. J., Townsend, J. P., Bøhn, T., Simonsen, G. S., Sundsfjord, A., & Nielsen, K. M. (2009). Factors affecting the reversal of antimicrobial-drug resistance. The Lancet Infectious Diseases, 9(6), 357–364. https://doi.org/10.1016/s1473-3099(09)70105-7

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Example Infectious Diseases projects

How can companies collaborate more effectively with researchers, experts, and thought leaders to make progress on Infectious Diseases?

Vaccine Development

An academic researcher in Infectious Diseases can contribute to the development of vaccines for various infectious diseases. Their expertise in understanding the mechanisms of pathogens and the immune system can help in designing effective vaccines.

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Epidemiological Studies

Academic researchers in Infectious Diseases can conduct epidemiological studies to understand the spread and impact of infectious diseases. This data can help companies in developing strategies for disease prevention and control.

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Working with an expert in Infectious Diseases can assist in the development of accurate and efficient diagnostic tests for infectious diseases. Their understanding of disease markers and detection methods can improve testing capabilities.

Public Health Policy

Collaboration with an academic researcher in Infectious Diseases can provide valuable insights for shaping public health policies. Their expertise can contribute to evidence-based decision-making and effective disease control measures.