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Work with thought leaders and academic experts in Microbiology

Companies can greatly benefit from working with experts in the field of Microbiology. These researchers bring a wealth of knowledge and skills that can contribute to various aspects of a company's operations. Here are some ways companies can collaborate with academic researchers in Microbiology: 1. Research and Development: Academic researchers can assist in conducting research and developing new products or technologies related to Microbiology. Their expertise can help companies stay at the forefront of scientific advancements. 2. Quality Control: Microbiology experts can ensure the quality and safety of products by conducting rigorous testing and analysis. They can help identify and mitigate potential risks associated with microbial contamination. 3. Disease Prevention and Control: Collaborating with Microbiology researchers can help companies develop strategies to prevent and control the spread of infectious diseases. This can be particularly valuable for industries such as healthcare, food production, and pharmaceuticals. 4. Environmental Impact Assessment: Microbiology researchers can assess the environmental impact of industrial processes and develop sustainable solutions. They can help companies minimize their ecological footprint and comply with environmental regulations. 5. Training and Education: Academic researchers can provide training and education programs to company employees, enhancing their understanding of Microbiology and its applications. This can improve overall efficiency and productivity within the organization.

Researchers on NotedSource with backgrounds in Microbiology include Dr. David Siderovski, Ph.D., Garrett A. Perchetti, Research Scientist - Virology, Odion Ikhimiukor, Maite DiLorenzo, Sarafa A. Akeem, Dawn Hancock, Michael W Harman, Ajay Badhan, Jeffrey Townsend, Dr. Justin Whalley, Ph.D, Maurice O'Sullivan, and Francisco JRC Coelho.

Dr. David Siderovski, Ph.D.

Fort Worth
Professor of Computational Pharmacology; Chair of HSC SBS Dept. of Pharmacology & Neuroscience
Most Relevant Research Expertise
Microbiology
Other Research Expertise (25)
Regulator of G protein Signaling (RGS) proteins
Pharmacology
Molecular Biology
Cellular and Molecular Neuroscience
Molecular Medicine
And 20 more
About
Dr. David Siderovski is a renowned scientist and academic, with a career spanning over two decades. He received his Ph.D. in Medical Biophysics from the University of Toronto in 1997, where he specialized in signal transduction and cellular signaling pathways. After completing his doctorate, Dr. Siderovski held various faculty positions at prestigious universities, including the University of North Carolina at Chapel Hill, West Virginia University School of Medicine, and the University of North Texas Health Science Center. At these institutions, Dr. Siderovski has made significant contributions to the field of pharmacology through his research on G protein-coupled receptors (GPCRs) and RGS proteins, which are key regulators of GPCR cellular signaling. His work has helped to advance the understanding of RGS proteins and their roles in various diseases, including cancer, cardiovascular disorders, and neurological disorders. In addition to his research, Dr. Siderovski is also a dedicated educator and mentor. He has taught and mentored numerous undergraduate, graduate, and medical students, and has served as a mentor for postdoctoral fellows and junior faculty members. He is known for his passion and enthusiasm for science and his ability to inspire and guide the next generation of scientists. Dr. Siderovski has received numerous awards and honors for his contributions to the scientific community. He was the recipient of the Abel Award in 2004 from the American Society of Pharmacology & Experimental Therapeutics for his pioneering discoveries of the RGS proteins and the GoLoco motif. He has also served on editorial boards of several scientific journals (including a decade at *J.Biol.Chem.*) and has been a member of various scientific committees, NIH study section panels, and pharma/biotech advisory boards, including for Inspire, Wyeth, and BellBrook Labs. Overall, Dr. David Siderovski is a highly accomplished and respected scientist and educator, whose research has had a significant impact on the field of pharmacology. His dedication and passion for science continue to inspire and influence the next generation of researchers in this field.
Most Relevant Publications (2+)

94 total publications

Genome-Scale Analysis Reveals Sst2 as the Principal Regulator of Mating Pheromone Signaling in the Yeast Saccharomyces cerevisiae

Eukaryotic Cell / Feb 01, 2006

Chasse, S. A., Flanary, P., Parnell, S. C., Hao, N., Cha, J. Y., Siderovski, D. P., & Dohlman, H. G. (2006). Genome-Scale Analysis Reveals Sst2 as the Principal Regulator of Mating Pheromone Signaling in the Yeast Saccharomyces cerevisiae. Eukaryotic Cell, 5(2), 330–346. https://doi.org/10.1128/ec.5.2.330-346.2006

A P-loop Mutation in Gα Subunits Prevents Transition to the Active State: Implications for G-protein Signaling in Fungal Pathogenesis

PLoS Pathogens / Feb 23, 2012

Bosch, D. E., Willard, F. S., Ramanujam, R., Kimple, A. J., Willard, M. D., Naqvi, N. I., & Siderovski, D. P. (2012). A P-loop Mutation in Gα Subunits Prevents Transition to the Active State: Implications for G-protein Signaling in Fungal Pathogenesis. PLoS Pathogens, 8(2), e1002553. https://doi.org/10.1371/journal.ppat.1002553

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Garrett A. Perchetti, Research Scientist - Virology

New York
Research Scientist and MD Candidate in virology with publications on infectious diseases, laboratory medicine, viral genetics, and clinical medicine
Most Relevant Research Expertise
Microbiology
Other Research Expertise (14)
Virology
Infectious Diseases
SARS-CoV-2
COVID-19
Microbiology (medical)
And 9 more
About
Garrett A. Perchetti is a highly accomplished research scientist in the field of virology. He received a Bachelor of Science in Microbiology and a Bachelor of Arts in Art History from the University of Washington. His interest in both science and the arts led him to pursue a career in virology, where he could combine his passion for understanding the natural world with his creative thinking skills. After completing his undergraduate studies, Garrett continued his education by earning a Medical Degree from Ross University School of Medicine in 2025. During his time in medical school, he developed a keen interest in virology and infectious diseases, which ultimately led him to specialize in this field. Garrett's educational background is complemented by his extensive experience as a research scientist. He has worked at the University of Washington School of Medicine, where he has conducted groundbreaking research on various types of viruses. His work has been published in numerous scientific journals, and he has presented his findings at international conferences. Garrett's contributions to the field of virology have been widely recognized, and he has received several awards and accolades for his work. He is known for his meticulous attention to detail, innovative thinking, and ability to collaborate effectively with other researchers. In his free time, Garrett enjoys painting, hiking, and traveling. He is also passionate about raising awareness about the importance of vaccinations and promoting public health initiatives. With his exceptional education and extensive experience, Garrett A. Perchetti is a valuable asset to the field of virology and will continue to make significant contributions in the future.

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Odion Ikhimiukor

Albany, New York, United States of America
Postdoctoral Research Scientist at University at Albany, State University of New York
Most Relevant Research Expertise
Microbiology
Other Research Expertise (23)
Pathogen Genomics
Bioinformatics
Molecular Biology
Epidemiology
Environmental Microbiology
And 18 more
About
A postdoctoral research scientist with over 9 years experience in bacterial genomics, microbiology, bioinformatics and antimicrobial resistance research. I’m seeking a Research Scientist or Epidemiologist role at public health genomics laboratories and I am the perfect fit for these roles because I have the following skills: molecular biology, research & development, strategic planning, project management, documentation, outbreak investigation, and cross-functional collaboration skills. I have leveraged my skills to work in a collaborative team-oriented environment to accomplish project goals related to examining the evolution of antimicrobial resistance as evidenced by over 7 national and international collaborations including the New York State Department of Health. I am also a proactive problem-solver adopting innovative and scientific thinking strategies in molecular biology to fulfill project objectives resulting in scientific discoveries including uncovering 1 novel hotspot for the dissemination of resistance in bacteria. I have gained mentorship expertise in promoting data reproducibility, and innovative research methodology in antimicrobial resistance research as evidenced by mentoring 10 professionals on evolutionary genomics, epidemiological statistics, and antimicrobial stewardship. I have also worked collaboratively with a team to apply pathogen genomics, bioinformatics, and leadership skills as demonstrated by working with over 10 highly collaborative teams including the Africa CDC. In addition, I have the following qualifications: Cross-functional collaborator and experience elucidating methods and frequencies of horizontal gene transfer and antimicrobial resistance spread in bacterial species, as demonstrated by 26 peer-reviewed publications including 1 in Nature Microbiology. Experience in leading and managing project details and tasks as evidenced by over 20 projects in pathogen genomics, epidemiology, antimicrobial resistance surveillance, and global health. Astute communication skills in bacterial epidemiology and antimicrobial resistance research resulting in 20 presentations and 6 travel awards to deliver such presentations, including the Bill and Melinda Gates Foundation. I want to serve an organization that prizes community, collaboration and humility among its employees. I’m excited to be on a team built around impact, innovation and a strong, positive reputation. I know I will thrive at a company where responsibility is valued, as well as self-improvement and time-management. I want to be a part of an organization that infuses growth into their brand, culture and market and who I can help make a difference in the world.
Most Relevant Publications (3+)

27 total publications

A bottom-up view of antimicrobial resistance transmission in developing countries

Nature Microbiology / May 30, 2022

Ikhimiukor, O. O., Odih, E. E., Donado-Godoy, P., & Okeke, I. N. (2022). A bottom-up view of antimicrobial resistance transmission in developing countries. Nature Microbiology, 7(6), 757–765. https://doi.org/10.1038/s41564-022-01124-w

Evolutionary dynamics of the accessory genomes of Staphylococcus aureus

mSphere / Mar 19, 2024

Piper, K. R., Ikhimiukor, O. O., Souza, S. S. R., Garcia-Aroca, T., & Andam, C. P. (2024). Evolutionary dynamics of the accessory genomes of Staphylococcus aureus. MSphere. https://doi.org/10.1128/msphere.00751-23

Establishing a national reference laboratory for antimicrobial resistance using a whole-genome sequencing framework: Nigeria’s experience

Microbiology / Sep 22, 2022

Okeke, I. N., Aboderin, A. O., Egwuenu, A., Underwood, A., Afolayan, A. O., Kekre, M., Oaikhena, A. O., Odih, E. E., Omotayo, H. T., Dada-Adegbola, H., Ogunleye, V. O., Ikhimiukor, O. O., Aanensen, D. M., & Ihekweazu, C. (2022). Establishing a national reference laboratory for antimicrobial resistance using a whole-genome sequencing framework: Nigeria’s experience. Microbiology, 168(8). https://doi.org/10.1099/mic.0.001208

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Maite DiLorenzo

Cary, North Carolina, United States of America
Ph.D. Professor, Microbiome Researcher & Molecular Biologist
Most Relevant Research Expertise
Microbiology
Other Research Expertise (7)
Molecular genetics
Environmental microbiology
Marine biology
Host-microbe interactions
Bioinformatics
And 2 more
About
PROFESSIONAL SUMMARY PhD level molecular biologist with over 10 years of work experience in qualitative, quantitative, and investigational microbiome research within academia and government agencies. Maintains broad knowledge of state-of-the-art principles and theory with significant laboratory expertise and great ability to mentor others. Strong organizational, analytical, troubleshooting, and problem-solving skills. Quick learner and able to understand complex topics. Self-motivated with a great work ethic and works well independently under minimum supervision. Superior collaborative and teamwork skills. Excellent written and verbal communication, with a keen eye for detail. Bilingual: English and Portuguese. SKILLS Molecular biology (i.e., DNA extraction, purification, primer design, PCR, qPCR, gel electrophoresis, next generation sequencing, bioinformatics, microbiome analysis, R/RStudio), microbiology (i.e., aseptic technique, culturing, selective plating, plate reading, membrane filtration, BSL2, flow cytometry, environmental monitoring), molecular genetics (i.e., cloning, transformations, gene editing), scientific communication (formal and informal), critical thinking, public speaking, mentorship, Microsoft Office & Google Suite, organization, time-management, flexible, forward-thinking, and motivated.

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Sarafa A. Akeem

Benin City
Lecturer and Food Researcher with fifteen peer-reviewed publications in international journal outlets.
Most Relevant Research Expertise
Microbiology
Other Research Expertise (12)
Food Processing and preservation
Food Chemistry and Nutrition
Food Product Development
Food Quality Control
Food Safety
And 7 more
About
Sarafa Adeyemi Akeem is an innovative, creative, highly motivated and result-oriented Food Researcher that is open to job opportunities as well as open to both national and international collaborations in the various areas of Food Chemistry/ biochemistry, Processing, Preservation, Process Engineering, Analysis, Quality Control, Safety, Product Development, Post Harvest Technology and Nutrition with the overall aim of contributing to the global food and nutrition security.
Most Relevant Publications (2+)

11 total publications

EFFECTS OF ADDITION OF DIFFERENT SPICES ON THE QUALITY ATTRIBUTES OF TIGER-NUT MILK (KUNUN-AYA) DURING STORAGE

Journal of microbiology, biotechnology and food sciences / Aug 01, 2017

INFLUENCE OF PARTIAL SUBSTITUTION OF SUGAR WITH SERENDIPITY BERRY (DIOSCOREOPHYLLUM CUMMINSII) EXTRACT ON THE QUALITY ATTRIBUTES AND SHELF-LIFE OF WHEAT BREAD

Journal of microbiology, biotechnology and food sciences / Aug 01, 2019

Monday Ojo Kayode, R., Adunni Abiodun, O., Adeyemi Akeem, S., & Omodasola Oyeneye, H. (2019). INFLUENCE OF PARTIAL SUBSTITUTION OF SUGAR WITH SERENDIPITY BERRY (DIOSCOREOPHYLLUM CUMMINSII) EXTRACT ON THE QUALITY ATTRIBUTES AND SHELF-LIFE OF WHEAT BREAD. Journal of Microbiology, Biotechnology and Food Sciences, 9(1), 115–120. https://doi.org/10.15414/jmbfs.2019.9.1.115-120

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Dawn Hancock

Vicksburg, Mississippi, United States of America
US Army Corps of Engineers Research and Development Center
Most Relevant Research Expertise
Microbiology
Other Research Expertise (5)
Biology, Microbiology, Molecular Biology, Toxicology, DNA, RNA
Biology
Molecular Biology
Data Analysis
Writing
About
US Army Corps of Engineers Research and Development Center. Experienced Researcher with a demonstrated history of laboratory experience, management experience, proposal writing, and publications in the military industry. Strong research professional skilled in DNA Sequencing, Microbiology, Water Quality, Molecular Biology, Marine Biology, and Ecology.

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Michael W Harman

East Greenwich, RI, Rhode Island, United States of America
Distinguished Subject Matter Expert & Leader in Medical Technologies.
Most Relevant Research Expertise
Microbiology
Other Research Expertise (13)
Bacteria & Cell Bio-Physics
Biomechanics
Infectious Diseases
Immunology
Parasitology
And 8 more
About
Highly skilled, energetic, and motivated professional empowered by over a decade of cross-disciplinary engineering and scientific applications experience. Presenting elegant solutions to prevalent biomedical challenges. Motivated by driving deliverable outcomes from complex research studies through effective leadership, active consulting work, and innovative problem-solving techniques. Seeking to make an immediate impact in a fast-paced biotechnology environment capitalizing on my advanced comprehension, continued professional growth, strategic product development expertise, and active network of personal connections across all areas of science, engineering, medicine, manufacturing and healthcare.
Most Relevant Publications (1+)

15 total publications

The Hybrid Histidine Kinase Hk1 Is Part of a Two-Component System That Is Essential for Survival of Borrelia burgdorferi in Feeding Ixodes scapularis Ticks

Infection and Immunity / Aug 01, 2011

Caimano, M. J., Kenedy, M. R., Kairu, T., Desrosiers, D. C., Harman, M., Dunham-Ems, S., Akins, D. R., Pal, U., & Radolf, J. D. (2011). The Hybrid Histidine Kinase Hk1 Is Part of a Two-Component System That Is Essential for Survival of Borrelia burgdorferi in Feeding Ixodes scapularis Ticks. Infection and Immunity, 79(8), 3117–3130. https://doi.org/10.1128/iai.05136-11

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Ajay Badhan

Lethbridge, Alberta, Canada
Research Biologist, Lethbridge Research Center, Canada
Most Relevant Research Expertise
Microbiology
Other Research Expertise (26)
Animal nutrition
cell wall biosynthesis and its deconstruction
biofuels
Waste Management and Disposal
Renewable Energy, Sustainability and the Environment
And 21 more
About
I am a proficient researcher with valuable research and teaching experience acquired at distinguished institutes like Complex Carbohydrate Research Center, US, University of Alberta, Canada, and Lethbridge Research Center (AAFC), Canada. I have been working for past 15 years on multiple projects focused on the economical, environmental and social sustainability of agricultural production. Improvement in livestock performance, productivity, and health by unlocking the microbiome, development of clean technologies, improving agriculture environmental performance, and Increase agro-ecosystem resilience are prime objectives for my research.
Most Relevant Publications (1+)

29 total publications

Role of Transglycosylation Products in the Expression of Multiple Xylanases in Myceliophthora sp. IMI 387099

Current Microbiology / May 14, 2007

Badhan, A. K., Chadha, B. S., Kaur, J., Sonia, K. G., Saini, H. S., & Bhat, M. K. (2007). Role of Transglycosylation Products in the Expression of Multiple Xylanases in Myceliophthora sp. IMI 387099. Current Microbiology, 54(6), 405–409. https://doi.org/10.1007/s00284-006-0204-5

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Jeffrey Townsend

New Haven, CT
Professor of Biostatistics and Ecology & Evolutionary Biology
Most Relevant Research Expertise
Microbiology
Other Research Expertise (52)
Evolutionary Genomics
Infectious Diseases
Genetics
Cell Biology
Ecology, Evolution, Behavior and Systematics
And 47 more
About
Jeffrey Townsend is a Professor of Organismic and Evolutionary Biology at Yale University. He received his Ph.D. from Harvard University in 2002 and his Sc.B. from Brown University in 1994. He has been a teacher at St. Ann's School and an Assistant Professor at the University of Connecticut. He is currently the Elihu Professor of Biostatistics at Yale University.
Most Relevant Publications (26+)

207 total publications

Horizontal gene transfer, genome innovation and evolution

Nature Reviews Microbiology / Aug 01, 2005

Gogarten, J. P., & Townsend, J. P. (2005). Horizontal gene transfer, genome innovation and evolution. Nature Reviews Microbiology, 3(9), 679–687. https://doi.org/10.1038/nrmicro1204

The durability of immunity against reinfection by SARS-CoV-2: a comparative evolutionary study

The Lancet Microbe / Dec 01, 2021

Townsend, J. P., Hassler, H. B., Wang, Z., Miura, S., Singh, J., Kumar, S., Ruddle, N. H., Galvani, A. P., & Dornburg, A. (2021). The durability of immunity against reinfection by SARS-CoV-2: a comparative evolutionary study. The Lancet Microbe, 2(12), e666–e675. https://doi.org/10.1016/s2666-5247(21)00219-6

Secondary Metabolism Gene Clusters Exhibit Increasingly Dynamic and Differential Expression during Asexual Growth, Conidiation, and Sexual Development in Neurospora crassa

mSystems / Jun 28, 2022

Wang, Z., Lopez-Giraldez, F., Slot, J., Yarden, O., Trail, F., & Townsend, J. P. (2022). Secondary Metabolism Gene Clusters Exhibit Increasingly Dynamic and Differential Expression during Asexual Growth, Conidiation, and Sexual Development in Neurospora crassa. MSystems, 7(3). https://doi.org/10.1128/msystems.00232-22

Transcriptional Divergence Underpinning Sexual Development in the Fungal Class Sordariomycetes

mBio / Jun 28, 2022

Kim, W., Wang, Z., Kim, H., Pham, K., Tu, Y., Townsend, J. P., & Trail, F. (2022). Transcriptional Divergence Underpinning Sexual Development in the Fungal Class Sordariomycetes. MBio, 13(3). https://doi.org/10.1128/mbio.01100-22

Integrative Activity of Mating Loci, Environmentally Responsive Genes, and Secondary Metabolism Pathways during Sexual Development of Chaetomium globosum

mBio / Dec 24, 2019

Wang, Z., López-Giráldez, F., Wang, J., Trail, F., & Townsend, J. P. (2019). Integrative Activity of Mating Loci, Environmentally Responsive Genes, and Secondary Metabolism Pathways during Sexual Development of Chaetomium globosum. MBio, 10(6). https://doi.org/10.1128/mbio.02119-19

Modelling microbial infection to address global health challenges

Nature Microbiology / Sep 20, 2019

Fitzpatrick, M. C., Bauch, C. T., Townsend, J. P., & Galvani, A. P. (2019). Modelling microbial infection to address global health challenges. Nature Microbiology, 4(10), 1612–1619. https://doi.org/10.1038/s41564-019-0565-8

Comparative Genomics and Transcriptomics During Sexual Development Gives Insight Into the Life History of the Cosmopolitan Fungus Fusarium neocosmosporiellum

Frontiers in Microbiology / Jun 07, 2019

Kim, W., Cavinder, B., Proctor, R. H., O’Donnell, K., Townsend, J. P., & Trail, F. (2019). Comparative Genomics and Transcriptomics During Sexual Development Gives Insight Into the Life History of the Cosmopolitan Fungus Fusarium neocosmosporiellum. Frontiers in Microbiology, 10. https://doi.org/10.3389/fmicb.2019.01247

Metabolism and Development during Conidial Germination in Response to a Carbon-Nitrogen-Rich Synthetic or a Natural Source of Nutrition in Neurospora crassa

mBio / Apr 30, 2019

Wang, Z., Miguel-Rojas, C., Lopez-Giraldez, F., Yarden, O., Trail, F., & Townsend, J. P. (2019). Metabolism and Development during Conidial Germination in Response to a Carbon-Nitrogen-Rich Synthetic or a Natural Source of Nutrition in Neurospora crassa. MBio, 10(2). https://doi.org/10.1128/mbio.00192-19

Using evolutionary genomics, transcriptomics, and systems biology to reveal gene networks underlying fungal development

Fungal Biology Reviews / Sep 01, 2018

Wang, Z., Gudibanda, A., Ugwuowo, U., Trail, F., & Townsend, J. P. (2018). Using evolutionary genomics, transcriptomics, and systems biology to reveal gene networks underlying fungal development. Fungal Biology Reviews, 32(4), 249–264. https://doi.org/10.1016/j.fbr.2018.02.001

Developmental Dynamics of Long Noncoding RNA Expression during Sexual Fruiting Body Formation in Fusarium graminearum

mBio / Sep 05, 2018

Kim, W., Miguel-Rojas, C., Wang, J., Townsend, J. P., & Trail, F. (2018). Developmental Dynamics of Long Noncoding RNA Expression during Sexual Fruiting Body Formation in Fusarium graminearum. MBio, 9(4). https://doi.org/10.1128/mbio.01292-18

Genomic Comparison Among Global Isolates of L. interrogans Serovars Copenhageni and Icterohaemorrhagiae Identified Natural Genetic Variation Caused by an Indel

Frontiers in Cellular and Infection Microbiology / Jun 19, 2018

Santos, L. A., Adhikarla, H., Yan, X., Wang, Z., Fouts, D. E., Vinetz, J. M., Alcantara, L. C. J., Hartskeerl, R. A., Goris, M. G. A., Picardeau, M., Reis, M. G., Townsend, J. P., Zhao, H., Ko, A. I., & Wunder, E. A. (2018). Genomic Comparison Among Global Isolates of L. interrogans Serovars Copenhageni and Icterohaemorrhagiae Identified Natural Genetic Variation Caused by an Indel. Frontiers in Cellular and Infection Microbiology, 8. https://doi.org/10.3389/fcimb.2018.00193

Lvr, a Signaling System That Controls Global Gene Regulation and Virulence in Pathogenic Leptospira

Frontiers in Cellular and Infection Microbiology / Feb 23, 2018

Adhikarla, H., Wunder, E. A., Mechaly, A. E., Mehta, S., Wang, Z., Santos, L., Bisht, V., Diggle, P., Murray, G., Adler, B., Lopez, F., Townsend, J. P., Groisman, E., Picardeau, M., Buschiazzo, A., & Ko, A. I. (2018). Lvr, a Signaling System That Controls Global Gene Regulation and Virulence in Pathogenic Leptospira. Frontiers in Cellular and Infection Microbiology, 8. https://doi.org/10.3389/fcimb.2018.00045

The Fast-Evolving phy-2 Gene Modulates Sexual Development in Response to Light in the Model Fungus Neurospora crassa

mBio / May 04, 2016

Wang, Z., Li, N., Li, J., Dunlap, J. C., Trail, F., & Townsend, J. P. (2016). The Fast-Evolving phy-2 Gene Modulates Sexual Development in Response to Light in the Model Fungus Neurospora crassa. MBio, 7(2). https://doi.org/10.1128/mbio.02148-15

Cellular Superspreaders: An Epidemiological Perspective on HIV Infection inside the Body

PLoS Pathogens / May 08, 2014

Talbert-Slagle, K., Atkins, K. E., Yan, K.-K., Khurana, E., Gerstein, M., Bradley, E. H., Berg, D., Galvani, A. P., & Townsend, J. P. (2014). Cellular Superspreaders: An Epidemiological Perspective on HIV Infection inside the Body. PLoS Pathogens, 10(5), e1004092. https://doi.org/10.1371/journal.ppat.1004092

Probabilistic uncertainty analysis of epidemiological modeling to guide public health intervention policy

Epidemics / Mar 01, 2014

Gilbert, J. A., Meyers, L. A., Galvani, A. P., & Townsend, J. P. (2014). Probabilistic uncertainty analysis of epidemiological modeling to guide public health intervention policy. Epidemics, 6, 37–45. https://doi.org/10.1016/j.epidem.2013.11.002

Global Gene Expression and Focused Knockout Analysis Reveals Genes Associated with Fungal Fruiting Body Development in Neurospora crassa

Eukaryotic Cell / Jan 01, 2014

Wang, Z., Lopez-Giraldez, F., Lehr, N., Farré, M., Common, R., Trail, F., & Townsend, J. P. (2014). Global Gene Expression and Focused Knockout Analysis Reveals Genes Associated with Fungal Fruiting Body Development in Neurospora crassa. Eukaryotic Cell, 13(1), 154–169. https://doi.org/10.1128/ec.00248-13

Detecting rare gene transfer events in bacterial populations

Frontiers in Microbiology / Jan 01, 2014

Nielsen, K. M., Bøhn, T., & Townsend, J. P. (2014). Detecting rare gene transfer events in bacterial populations. Frontiers in Microbiology, 4. https://doi.org/10.3389/fmicb.2013.00415

Yeast response to LA virus indicates coadapted global gene expression during mycoviral infection

FEMS Yeast Research / Jan 02, 2013

McBride, R. C., Boucher, N., Park, D. S., Turner, P. E., & Townsend, J. P. (2013). Yeast response to LA virus indicates coadapted global gene expression during mycoviral infection. FEMS Yeast Research, 13(2), 162–179. https://doi.org/10.1111/1567-1364.12019

Transcriptome analyses during fruiting body formation in Fusarium graminearum and Fusarium verticillioides reflect species life history and ecology

Fungal Genetics and Biology / Aug 01, 2012

Sikhakolli, U. R., López-Giráldez, F., Li, N., Common, R., Townsend, J. P., & Trail, F. (2012). Transcriptome analyses during fruiting body formation in Fusarium graminearum and Fusarium verticillioides reflect species life history and ecology. Fungal Genetics and Biology, 49(8), 663–673. https://doi.org/10.1016/j.fgb.2012.05.009

Sex-specific gene expression during asexual development of Neurospora crassa

Fungal Genetics and Biology / Jul 01, 2012

Wang, Z., Kin, K., López-Giráldez, F., Johannesson, H., & Townsend, J. P. (2012). Sex-specific gene expression during asexual development of Neurospora crassa. Fungal Genetics and Biology, 49(7), 533–543. https://doi.org/10.1016/j.fgb.2012.05.004

Differential impact of nutrition on developmental and metabolic gene expression during fruiting body development in Neurospora crassa

Fungal Genetics and Biology / May 01, 2012

Wang, Z., Lehr, N., Trail, F., & Townsend, J. P. (2012). Differential impact of nutrition on developmental and metabolic gene expression during fruiting body development in Neurospora crassa. Fungal Genetics and Biology, 49(5), 405–413. https://doi.org/10.1016/j.fgb.2012.03.004

Assessing the Probability of Detection of Horizontal Gene Transfer Events in Bacterial Populations

Frontiers in Microbiology / Jan 01, 2012

Townsend, J. P., Bøhn, T., & Nielsen, K. M. (2012). Assessing the Probability of Detection of Horizontal Gene Transfer Events in Bacterial Populations. Frontiers in Microbiology, 3. https://doi.org/10.3389/fmicb.2012.00027

SIR2 and other genes are abundantly expressed in long-lived natural segregants for replicative aging of the budding yeast Saccharomyces cerevisiae

FEMS Yeast Research / Mar 01, 2011

Guo, Z., Adomas, A. B., Jackson, E. D., Qin, H., & Townsend, J. P. (2011). SIR2 and other genes are abundantly expressed in long-lived natural segregants for replicative aging of the budding yeast Saccharomyces cerevisiae. FEMS Yeast Research, 11(4), 345–355. https://doi.org/10.1111/j.1567-1364.2011.00723.x

The filamentous fungal gene expression database (FFGED)

Fungal Genetics and Biology / Mar 01, 2010

Zhang, Z., & Townsend, J. P. (2010). The filamentous fungal gene expression database (FFGED). Fungal Genetics and Biology, 47(3), 199–204. https://doi.org/10.1016/j.fgb.2009.12.001

Phase-specific gene expression underlying morphological adaptations of the dimorphic human pathogenic fungus, Coccidioides posadasii

Fungal Genetics and Biology / Aug 01, 2006

Johannesson, H., Kasuga, T., Schaller, R. A., Good, B., Gardner, M. J., Townsend, J. P., Cole, G. T., & Taylor, J. W. (2006). Phase-specific gene expression underlying morphological adaptations of the dimorphic human pathogenic fungus, Coccidioides posadasii. Fungal Genetics and Biology, 43(8), 545–559. https://doi.org/10.1016/j.fgb.2006.02.003

Population structure and gene evolution inSaccharomyces cerevisiae

FEMS Yeast Research / Aug 01, 2006

Aa, E., Townsend, J. P., Adams, R. I., Nielsen, K. M., & Taylor, J. W. (2006). Population structure and gene evolution inSaccharomyces cerevisiae. FEMS Yeast Research, 6(5), 702–715. https://doi.org/10.1111/j.1567-1364.2006.00059.x

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Dr. Justin Whalley, Ph.D

North Chicago, Illinois, United States of America
Assistant Professor of Bioinformatics, with experience in finding the quintessential features in large, multi-layered 'omic datasets.
Research Expertise (19)
Genomics
Bioinformatics
Immunity
Tensor decomposition
Cancer
And 14 more
About
Dr. Justin P. Whalley was educated in the UK (M.Sci. Mathematics, University of Bristol) and France (Ph.D. Bioinformatics, University of Évry). He moved to Spain to work as a postdoc at the National Center for Genomic Analysis (CNAG). During his time there, he ran the Quality Control working group for the Pan-Cancer Analysis of Whole Genomes project to assess the data coming in and reduce batch effects. This involved collaboration with researchers from the Broad Institute of MIT and Harvard, the German Cancer Research Center and the Wellcome Sanger Institute in the UK. He returned to the UK to work as a [Senior Bioinformatician at the University of Oxford](https://www.well.ox.ac.uk/people/jpw/). His time there coincided with the global pandemic and he was deeply involved in the COvid-19 Multi-omics Blood ATlas (COMBAT) consortium as the lead for the Integration (Tensor) working group. Dr. Whalley became a member of the [faculty of the Chicago Medical School at Rosalind Franklin University of Medicine and Science](https://www.rosalindfranklin.edu/academics/faculty/justin-p-whalley/) in January 2023.

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Maurice O'Sullivan

Cork
University College Cork, School of Food and Nutritional Sciences
Most Relevant Research Expertise
Microbiology
Other Research Expertise (33)
sensory
meat
dairy
consumer
Food Science
And 28 more
About
Dr. Maurice O’ Sullivan is a sensory scientist and senior lecturer in food science working in the School of Food and Nutritional Sciences, UCC. In the past Maurice has worked in the food industry as a sensory scientist and flavour chemist for Diageo Baileys and Guinness. He has worked as a food technologist and process/product development scientist for the processed foods sector in the 1990’s as well as more recently a product development consultant to the dairy, meat and beverage industries. He has a Ph.D. in Sensory and Consumer science from the Department of Food Science, University of Copenhagen, Denmark as well as MSc. and BSc. Degrees in Food Science and Technology from University College Cork (UCC). Currently Maurice works in the School of Food and Nutritional Sciences, University College Cork as a senior lecturer and sensory and product reformulation project coordinator on large scale multi-million euro research projects. For many years he has also managed the “Sensory Unit” at UCC working on sensory and flavour based projects involving a diverse selection of products. This sensory science based service (at UCC) includes testing the difference, affective and descriptive analysis of foods and beverages as well as assessing shelf-life and comparing sensory results to microbiological and analytical (instrumental, physic-chemical) data using multivariate data analysis (MVA). Sensory testing is critical for new product development/optimisation, ingredient substitution and devising appropriate packaging and comparing foods or beverages to competitor’s products. Again, the key to unlocking the hidden secrets of this multimodal data is with MVA (Multivariate Data Analysis). To date Maurice has secured significant research funding of €5,300,000 Gross, €3,843,329.30 to UCC. He has worked in the area of targeted ingredient (salt, fat, sugar) reduction in foods since 1997. The focus of this research has been reduction of negative ingredients linked to civilisation diseases (Diabetes, Obesity, Heart Disease, Anaemia) while maintaining sensory properties, but also improving nutritional quality of developed products. To date this research has produced numerous publications with many more in development. Other research areas include Cross Cultural Sensory Perception of Irish Dairy Products in Asia, Europe and North America as well as Foods for the Elderly, Packaging and Meat optimisation. Maurice has published more than 200 sensory or consumer research based articles (papers, book chapters, proceedings etc.).
Most Relevant Publications (6+)

85 total publications

Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir

mSystems / Oct 25, 2016

Walsh, A. M., Crispie, F., Kilcawley, K., O’Sullivan, O., O’Sullivan, M. G., Claesson, M. J., & Cotter, P. D. (2016). Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir. MSystems, 1(5). https://doi.org/10.1128/msystems.00052-16

Factors Influencing the Flavour of Bovine Milk and Cheese from Grass Based versus Non-Grass Based Milk Production Systems

Foods / Mar 13, 2018

Kilcawley, K., Faulkner, H., Clarke, H., O’Sullivan, M., & Kerry, J. (2018). Factors Influencing the Flavour of Bovine Milk and Cheese from Grass Based versus Non-Grass Based Milk Production Systems. Foods, 7(3), 37. https://doi.org/10.3390/foods7030037

Evaluation of the Potential of Lactobacillus paracasei Adjuncts for Flavor Compounds Development and Diversification in Short-Aged Cheddar Cheese

Frontiers in Microbiology / Jul 05, 2018

Stefanovic, E., Kilcawley, K. N., Roces, C., Rea, M. C., O’Sullivan, M., Sheehan, J. J., & McAuliffe, O. (2018). Evaluation of the Potential of Lactobacillus paracasei Adjuncts for Flavor Compounds Development and Diversification in Short-Aged Cheddar Cheese. Frontiers in Microbiology, 9. https://doi.org/10.3389/fmicb.2018.01506

Comparison of Automated Extraction Techniques for Volatile Analysis of Whole Milk Powder

Foods / Sep 01, 2021

Cheng, Z., Mannion, D. T., O’Sullivan, M. G., Miao, S., Kerry, J. P., & Kilcawley, K. N. (2021). Comparison of Automated Extraction Techniques for Volatile Analysis of Whole Milk Powder. Foods, 10(9), 2061. https://doi.org/10.3390/foods10092061

Assessment and Use of Optical Oxygen Sensors as Tools to Assist in Optimal Product Component Selection for the Development of Packs of Ready-to-Eat Mixed Salads and for the Non-Destructive Monitoring of in-Pack Oxygen Levels Using Chilled Storage

Foods / May 22, 2013

Hempel, A., O’Sullivan, M., Papkovsky, D., & Kerry, J. (2013). Assessment and Use of Optical Oxygen Sensors as Tools to Assist in Optimal Product Component Selection for the Development of Packs of Ready-to-Eat Mixed Salads and for the Non-Destructive Monitoring of in-Pack Oxygen Levels Using Chilled Storage. Foods, 2(2), 213–224. https://doi.org/10.3390/foods2020213

Acquisition of the yeastKluyveromyces marxianusfrom unpasteurised milk by a kefir grain enhances kefir quality

FEMS Microbiology Letters / Jul 01, 2016

Gethins, L., Rea, M. C., Stanton, C., Ross, R. P., Kilcawley, K., O’Sullivan, M., Crotty, S., & Morrissey, J. P. (2016). Acquisition of the yeastKluyveromyces marxianusfrom unpasteurised milk by a kefir grain enhances kefir quality. FEMS Microbiology Letters, 363(16), fnw165. https://doi.org/10.1093/femsle/fnw165

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Francisco JRC Coelho

Aveiro
Researcher/ Microbiome/ Bussiness enthusiast
Most Relevant Research Expertise
Microbiology
Other Research Expertise (20)
Molecular biology
Microbial Ecology
Environmental Microbiology
Microbiome
Ecology
And 15 more
About
I am a generalist with a strong background in research and a passion for exploring new ideas and contributing to business development. My journey as a researcher began in 2009 at the University of Aveiro. Over the years, I progressed from a PhD student to a postdoctoral researcher and ultimately became a researcher, funding my positions through competitive calls. My technical background spans across several areas and with different degrees of expertise. These include microbiology, microbiome analysis, molecular biology, bioinformatic and biostatistics. I have authored and co-authored over 35 articles, some of which have been published in high profile scientific journals (https://www.cienciavitae.pt/portal/2119-2C29-3E33). I have co-founded two startups and was involved in all the process, including IP protection, prototype development, and engaging potential customers. I possess a comprehensive understanding of day-to-day business operations, including marketing, sales, and finance. I am driven by curiosity to learn and thrive in dynamic environments that foster innovation and growth.
Most Relevant Publications (3+)

37 total publications

Relation between bacterial activity in the surface microlayer and estuarine hydrodynamics

FEMS Microbiology Ecology / Jul 19, 2011

Santos, L., Santos, A. L., Coelho, F. J. R. C., Gomes, N. C. M., Dias, J. M., Cunha, Â., & Almeida, A. (2011). Relation between bacterial activity in the surface microlayer and estuarine hydrodynamics: Bacterial activity in the SML and estuarine hydrodynamics. FEMS Microbiology Ecology, 77(3), 636–646. https://doi.org/10.1111/j.1574-6941.2011.01147.x

Brachybacterium atlanticum sp. nov., a novel marine bacterium isolated from the Atlantic Ocean

International Journal of Systematic and Evolutionary Microbiology / Aug 04, 2023

de Castro, I., Ribeiro, S., Oliveira, V., Coelho, F. J. R. C., de Lurdes Dapkevicius, M., de Azevedo, E. B., & Barcelos e Ramos, J. (2023). Brachybacterium atlanticum sp. nov., a novel marine bacterium isolated from the Atlantic Ocean. International Journal of Systematic and Evolutionary Microbiology, 73(8). https://doi.org/10.1099/ijsem.0.005959

Emiliania huxleyi—Bacteria Interactions under Increasing CO2 Concentrations

Microorganisms / Dec 13, 2022

Barcelos e Ramos, J., Ribeiro, S. C., Schulz, K. G., Coelho, F. J. R. D. C., Oliveira, V., Cunha, A., Gomes, N. C. M., Brownlee, C., Passow, U., & de Azevedo, E. B. (2022). Emiliania huxleyi—Bacteria Interactions under Increasing CO2 Concentrations. Microorganisms, 10(12), 2461. https://doi.org/10.3390/microorganisms10122461

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Example Microbiology projects

How can companies collaborate more effectively with researchers, experts, and thought leaders to make progress on Microbiology?

Development of Novel Antibiotics

A pharmaceutical company can collaborate with a Microbiology expert to develop new antibiotics to combat antibiotic-resistant bacteria. The researcher can contribute their knowledge of microbial mechanisms and drug discovery techniques to identify potential targets and develop effective treatments.

Food Safety Enhancement

A food production company can work with a Microbiology researcher to improve food safety measures. The researcher can conduct microbial analysis, develop protocols for contamination prevention, and provide guidance on proper handling and storage of food products.

Bioremediation Solutions

An environmental consulting firm can partner with a Microbiology expert to develop bioremediation solutions for contaminated sites. The researcher can identify and cultivate microbial species capable of degrading pollutants, leading to effective and sustainable remediation strategies.

Infectious Disease Surveillance

A healthcare organization can collaborate with a Microbiology expert to establish an infectious disease surveillance system. The researcher can provide expertise in pathogen detection, monitoring, and data analysis, enabling early detection and response to outbreaks.

Microbial Product Development

A biotechnology company can partner with a Microbiology researcher to develop microbial-based products. The researcher can contribute their knowledge of microbial metabolism and genetic engineering to optimize production processes and enhance product efficacy.