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Experts and Thought Leaders in Computer Science

Christos Makridis

Nashville, TN
Web3 and Labor Economist in Academia, Entrepreneurship, and Policy
Most Relevant Research Interests
Computer Networks and Communications
Computer Science Applications
Other Research Interests (14)
Finance
Economics and Econometrics
Accounting
Pharmacology (medical)
Law
And 9 more
About
Christos A. Makridis holds academic appointments at Columbia Business School, Stanford University, Baylor University, University of Nicosia, and Arizona State University. He is also an adjunct scholar at the Manhattan Institute, senior adviser at Gallup, and senior adviser at the National AI Institute in the Department of Veterans Affairs. Christos is the CEO/co-founder of [Dainamic](https://www.dainamic.ai/), a technology startup working to democratize the use and application of data science and AI techniques for small and mid sized organizations, and CTO/co-founder of [Living Opera](https://www.livingopera.org/), a web3 startup working to bridge classical music and blockchain technologies. Christos previously served on the White House Council of Economic Advisers managing the cybersecurity, technology, and space activities, as a Non-resident Fellow at the Cyber Security Project in the Harvard Kennedy School of Government, as a Digital Fellow at the Initiative at the Digital Economy in the MIT Sloan School of Management, a a Non-resident Research Scientist at Datacamp, and as a Visiting Fellow at the Foundation for Defense of Democracies. Christos’ primary academic research focuses on labor economics, the digital economy, and personal finance and well-being. He has published over 70 peer-reviewed research papers in academic journals and over 170 news articles in the press. Christos earned a Bachelor’s in Economics and Minor in Mathematics at Arizona State University, as well a dual Masters and PhDs in Economics and Management Science & Engineering at Stanford University.
Most Relevant Publications (3+)

25 total publications

Do data breaches damage reputation? Evidence from 45 companies between 2002 and 2018

Journal of Cybersecurity / Jan 01, 2021

Makridis, C. A. (2021). Do data breaches damage reputation? Evidence from 45 companies between 2002 and 2018. Journal of Cybersecurity, 7(1). https://doi.org/10.1093/cybsec/tyab021

Leveraging machine learning to characterize the role of socio-economic determinants on physical health and well-being among veterans

Computers in Biology and Medicine / Jun 01, 2021

Makridis, C. A., Zhao, D. Y., Bejan, C. A., & Alterovitz, G. (2021). Leveraging machine learning to characterize the role of socio-economic determinants on physical health and well-being among veterans. Computers in Biology and Medicine, 133, 104354. https://doi.org/10.1016/j.compbiomed.2021.104354

Designing COVID-19 mortality predictions to advance clinical outcomes: Evidence from the Department of Veterans Affairs

BMJ Health & Care Informatics / Jun 01, 2021

Makridis, C. A., Strebel, T., Marconi, V., & Alterovitz, G. (2021). Designing COVID-19 mortality predictions to advance clinical outcomes: Evidence from the Department of Veterans Affairs. BMJ Health & Care Informatics, 28(1), e100312. https://doi.org/10.1136/bmjhci-2020-100312

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Ping Luo

Toronto, Ontario, Canada
Bioinformatics Specialist at Princess Margaret Cancer Centre with experience in deep learning
Most Relevant Research Interests
deep learning
Computational Theory and Mathematics
Computer Science Applications
Artificial Intelligence
Information Systems
Other Research Interests (17)
single-cell genomics
complex network analysis
Genetics (clinical)
Genetics
Molecular Medicine
And 12 more
About
8 years of science and engineering experience integrating multi-omics data to identify biomarkers for cancer studies. Seeking to apply data analytics expertise to develop new diagnosis and treatment strategies.
Most Relevant Publications (6+)

23 total publications

Enhancing the prediction of disease–gene associations with multimodal deep learning

Bioinformatics / Mar 02, 2019

Luo, P., Li, Y., Tian, L.-P., & Wu, F.-X. (2019). Enhancing the prediction of disease–gene associations with multimodal deep learning. Bioinformatics, 35(19), 3735–3742. https://doi.org/10.1093/bioinformatics/btz155

CASNMF: A Converged Algorithm for symmetrical nonnegative matrix factorization

Neurocomputing / Jan 01, 2018

Tian, L.-P., Luo, P., Wang, H., Zheng, H., & Wu, F.-X. (2018). CASNMF: A Converged Algorithm for symmetrical nonnegative matrix factorization. Neurocomputing, 275, 2031–2040. https://doi.org/10.1016/j.neucom.2017.10.039

Identifying cell types from single-cell data based on similarities and dissimilarities between cells

BMC Bioinformatics / May 01, 2021

Li, Y., Luo, P., Lu, Y., & Wu, F.-X. (2021). Identifying cell types from single-cell data based on similarities and dissimilarities between cells. BMC Bioinformatics, 22(S3). https://doi.org/10.1186/s12859-020-03873-z

Ensemble disease gene prediction by clinical sample-based networks

BMC Bioinformatics / Mar 01, 2020

Luo, P., Tian, L.-P., Chen, B., Xiao, Q., & Wu, F.-X. (2020). Ensemble disease gene prediction by clinical sample-based networks. BMC Bioinformatics, 21(S2). https://doi.org/10.1186/s12859-020-3346-8

Evaluation of single-cell RNAseq labelling algorithms using cancer datasets

Briefings in Bioinformatics / Dec 30, 2022

Christensen, E., Luo, P., Turinsky, A., Husić, M., Mahalanabis, A., Naidas, A., Diaz-Mejia, J. J., Brudno, M., Pugh, T., Ramani, A., & Shooshtari, P. (2022). Evaluation of single-cell RNAseq labelling algorithms using cancer datasets. Briefings in Bioinformatics, 24(1). https://doi.org/10.1093/bib/bbac561

Evaluation of single-cell RNA-seq clustering algorithms on cancer tumor datasets

Computational and Structural Biotechnology Journal / Jan 01, 2022

Mahalanabis, A., Turinsky, A. L., Husić, M., Christensen, E., Luo, P., Naidas, A., Brudno, M., Pugh, T., Ramani, A. K., & Shooshtari, P. (2022). Evaluation of single-cell RNA-seq clustering algorithms on cancer tumor datasets. Computational and Structural Biotechnology Journal, 20, 6375–6387. https://doi.org/10.1016/j.csbj.2022.10.029

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Burcu Vitrinel, Ph.D.

San Francisco
Cross-functional life sciences strategy professional with a Ph.D. in genetics
Most Relevant Research Interests
Computer Science Applications
Other Research Interests (15)
Molecular Biology
Biochemistry
Cell Biology
Aging
Virology
And 10 more
About
Cross-functional life sciences **strategy** professional with a doctoral degree in **genetics**; worked on 16+ projects in collaboration with 7+ big pharma clients as the lead consultant in a **client-facing** role. Exceptional understanding of current life sciences **market trends**. Scientist with 10+ years of wet-lab with hands-on **CRISPR-Cas9 gene** **editing and tandem mass-spectrometry** experience with 3 first-author papers. Experienced primary market researcher for pharmaceutical companies. Award-winning science communicator for a wide range of audiences tailored to different internal and external stakeholders.
Most Relevant Publications (1+)

10 total publications

Ring Finger 149-Related Is an FGF/MAPK-Independent Regulator of Pharyngeal Muscle Fate Specification

International Journal of Molecular Sciences / May 16, 2023

Vitrinel, B., Vogel, C., & Christiaen, L. (2023). Ring Finger 149-Related Is an FGF/MAPK-Independent Regulator of Pharyngeal Muscle Fate Specification. International Journal of Molecular Sciences, 24(10), 8865. https://doi.org/10.3390/ijms24108865

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PhD.Heydy Castillejos

Weston, Florida, United States of America
Research professor, Universidad Autónoma del Estado de Hidalgo
Most Relevant Research Interests
Modeling and Simulation
Computer Science Applications
Other Research Interests (9)
Image and signal processing
boimedical signals
segmentation
classification
CAD
And 4 more
About
Results-oriented professional with over 15 years of experience in research and teaching. Skilled in Python, MATLAB programming, image processing, and telecommunications. Demonstrated ability to work under pressure, manage time effectively, and solve complex problems. Successfully advised doctoral candidates on data analysis methods, authored multiple peer-reviewed journal articles, and secured funding for future research initiatives. Developed innovative curricula for advanced mathematics courses and utilized technology to enhance learning experiences. A fast learner with excellent written and verbal communication skills.
Most Relevant Publications (3+)

15 total publications

Wavelet Transform Fuzzy Algorithms for Dermoscopic Image Segmentation

Computational and Mathematical Methods in Medicine / Jan 01, 2012

Castillejos, H., Ponomaryov, V., Nino-de-Rivera, L., & Golikov, V. (2012). Wavelet Transform Fuzzy Algorithms for Dermoscopic Image Segmentation. Computational and Mathematical Methods in Medicine, 2012, 1–11. https://doi.org/10.1155/2012/578721

Written Documents Analyzed as Nature-Inspired Processes: Persistence, Anti-Persistence, and Random Walks—We Remember, as Along Came Writing—T. Holopainen

Applied Sciences / Sep 12, 2020

López-Ortega, O., Pérez-Cortés, O., Castillejos-Fernández, H., Castro-Espinoza, F.-A., & González-Mendoza, M. (2020). Written Documents Analyzed as Nature-Inspired Processes: Persistence, Anti-Persistence, and Random Walks—We Remember, as Along Came Writing—T. Holopainen. Applied Sciences, 10(18), 6354. https://doi.org/10.3390/app10186354

Crouch Gait Analysis and Visualization Based on Gait Forward and Inverse Kinematics

Applied Sciences / Oct 11, 2022

Gonzalez-Islas, J.-C., Dominguez-Ramirez, O.-A., Lopez-Ortega, O., Peña-Ramirez, J., Ordaz-Oliver, J.-P., & Marroquin-Gutierrez, F. (2022). Crouch Gait Analysis and Visualization Based on Gait Forward and Inverse Kinematics. Applied Sciences, 12(20), 10197. https://doi.org/10.3390/app122010197

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IQRAM HUSSAIN, Ph.D.

New York City, New York, United States of America
Weill Cornell Medicine, Cornell University, NY, USA
Most Relevant Research Interests
Computer Science Applications
Software
Artificial Intelligence
Other Research Interests (30)
Biomedical & Medical Physics
AI (Machine & Deep Learning)
Anesthesiology
Sleep Medicine
Human Gait & brain
And 25 more
About
Iqram Hussain works at the Department of Anesthesiology, Weill Cornell Medicine, Cornell University, NY, USA. Earlier, he was a postdoctoral researcher at the Medical Research Center, Department of Biomedical Engineering, Seoul National University. He pursued a Ph.D. degree in Medical Physics from the University of Science and Technology (UST), South Korea. He worked as a Research Associate with the Korea Research Institute of Standards and Science (KRISS), Daejeon, South Korea. He worked on the Knowledgebase Super Brain (KSB) project at the Electronics and Telecommunication Research Institute (ETRI), Daejeon. He received a B.Sc. degree in mechanical engineering from the Khulna University of Engineering & Technology, Bangladesh, in 2007. He has ten years of work experience in power plant operation and maintenance and power plant project management. His research interests include wearable sleep monitoring, neuroscience, medical physics, human factors, and ergonomics. He has experience in healthcare research, project management, power plant operation, and maintenance. He is a reviewer in IEEE Access, Sensors, Applied Sciences, Biomedical Signal Processing and Control, IEEE Transactions, Science of the Total Environment, Neuroscience Informatics, Brain Sciences, etc. He is a guest editor in special issues of several Journals. Website: https://sites.google.com/view/iqram/home
Most Relevant Publications (2+)

44 total publications

Measuring technological patent scope by semantic analysis of patent claims – An indicator for valuating patents

World Patent Information / Sep 01, 2019

Wittfoth, S. (2019). Measuring technological patent scope by semantic analysis of patent claims – An indicator for valuating patents. World Patent Information, 58, 101906. https://doi.org/10.1016/j.wpi.2019.101906

Tracking Trajectory Planning of Space Manipulator for Capturing Operation

International Journal of Advanced Robotic Systems / Sep 01, 2006

Huang, P., Xu, Y., & Liang, B. (2006). Tracking Trajectory Planning of Space Manipulator for Capturing Operation. International Journal of Advanced Robotic Systems, 3(3), 31. https://doi.org/10.5772/5735

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Aruna Ranaweera

Colombo
Professor at University of Kelaniya, PhD(Kyung Hee University, South Korea)
Most Relevant Research Interests
Control and Systems Engineering
Computer Networks and Communications
Hardware and Architecture
Computer Science Applications
Other Research Interests (13)
Wireless Power Transfer
Metamaterials
Supercapacitor Assisted Power Electronics
Electronic, Optical and Magnetic Materials
Surfaces, Coatings and Films
And 8 more
About
I am dedicated and passionate about inspiring and engaging my students in an effective learning process to generate new knowledge, do innovations, engage in technology transfer, and enhance human capital through interdisciplinary and collaborative research for the well-being of academia, industry, and society.
Most Relevant Publications (2+)

32 total publications

Supercapacitor Assisted Hybrid PV System for Efficient Solar Energy Harnessing

Electronics / Oct 04, 2021

Piyumal, K., Ranaweera, A., Kalingamudali, S., & Kularatna, N. (2021). Supercapacitor Assisted Hybrid PV System for Efficient Solar Energy Harnessing. Electronics, 10(19), 2422. https://doi.org/10.3390/electronics10192422

Commemorative Issue of Defence Science Journal on Golden Jubilee of DRDO

Defence Science Journal / Mar 25, 2010

Moorthy, A. (2010). Commemorative Issue of Defence Science Journal on Golden Jubilee of DRDO. Defence Science Journal, 60(2), 121–123. https://doi.org/10.14429/dsj.60.345

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Keiran Thompson

Palo Alto, California, United States of America
Stanford University
Most Relevant Research Interests
Computer Science Applications
Other Research Interests (5)
Physical and Theoretical Chemistry
Colloid and Surface Chemistry
Biochemistry
Catalysis
Library and Information Sciences
About
Keiran Thompson is a machine learning and quantum chemistry researcher. Originally from Australia, he currently works as an AI research scientist at Stanford University where he transfers machine learning knowledge from the private sector to academic research which can then be reconverted back to private sector usage. He is experienced with large scale numerical computing and has led several startups as Chief Scientist.
Most Relevant Publications (2+)

30 total publications

Large-Scale Functional Group Symmetry-Adapted Perturbation Theory on Graphical Processing Units

Journal of Chemical Theory and Computation / Jan 18, 2018

Parrish, R. M., Thompson, K. C., & Martínez, T. J. (2018). Large-Scale Functional Group Symmetry-Adapted Perturbation Theory on Graphical Processing Units. Journal of Chemical Theory and Computation, 14(3), 1737–1753. https://doi.org/10.1021/acs.jctc.7b01053

TeraChem Cloud: A High-Performance Computing Service for Scalable Distributed GPU-Accelerated Electronic Structure Calculations

Journal of Chemical Information and Modeling / Apr 08, 2020

Seritan, S., Thompson, K., & Martínez, T. J. (2020). TeraChem Cloud: A High-Performance Computing Service for Scalable Distributed GPU-Accelerated Electronic Structure Calculations. Journal of Chemical Information and Modeling, 60(4), 2126–2137. https://doi.org/10.1021/acs.jcim.9b01152

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Jerry Schnepp, Ph.D.

Chicago, Illinois, United States of America
Chair of Computer Science, Judson University
Most Relevant Research Interests
Human Computer Interaction
Software
Information Systems
Computer Networks and Communications
Human-Computer Interaction
Computer Vision and Pattern Recognition
Computer Graphics and Computer-Aided Design
Computer Science Applications
Other Research Interests (11)
User Experience
Interactive Media
Computer Graphics
Accommodations for the Deaf
Nutrition and Dietetics
And 6 more
About
As a technologist, designer, and creative problem-solver, I'm passionate about teaching people to embrace new technology and explore. I am the Chair of the Computer Science department at Judson University. Before my appointment, I served as an Associate Professor in the College of Technology, Architecture and Applied Engineering at Bowling Green State University (BGSU). I teach courses in Programming, Data Structures and Algorithms, Software Design Patterns, Interactive Media, Usability, User Experience, and Augmented/Virtual Reality. I was the founding director of the Collab Lab, a hands-on, creative space for students and faculty to engage in collaborative work. My research efforts are directed in several areas: AI Supported Individualized Learning, Learner Experience Design, Technology for Online Assessment, Interactive Mobile Learning, and Computerized Sign Language Synthesis. I enjoy collaborating on projects involving cutting-edge technology and new applications.
Most Relevant Publications (3+)

20 total publications

An automated technique for real-time production of lifelike animations of American Sign Language

Universal Access in the Information Society / May 14, 2015

McDonald, J., Wolfe, R., Schnepp, J., Hochgesang, J., Jamrozik, D. G., Stumbo, M., Berke, L., Bialek, M., & Thomas, F. (2015). An automated technique for real-time production of lifelike animations of American Sign Language. Universal Access in the Information Society, 15(4), 551–566. https://doi.org/10.1007/s10209-015-0407-2

Special issue: recent advances in sign language translation and avatar technology

Universal Access in the Information Society / Jun 02, 2015

Wolfe, R., Efthimiou, E., Glauert, J., Hanke, T., McDonald, J., & Schnepp, J. (2015). Special issue: recent advances in sign language translation and avatar technology. Universal Access in the Information Society, 15(4), 485–486. https://doi.org/10.1007/s10209-015-0412-5

An improved articulated model of the human hand

The Visual Computer / May 01, 2001

McDonald, J., Toro, J., Alkoby, K., Berthiaume, A., Carter, R., Chomwong, P., Christopher, J., Davidson, M. J., Furst, J., Konie, B., Lancaster, G., Roychoudhuri, L., Sedgwick, E., Tomuro, N., & Wolfe, R. (2001). An improved articulated model of the human hand. The Visual Computer, 17(3), 158–166. https://doi.org/10.1007/s003710100104

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Daniel Milej, Ph.D.

London, Ontario, Canada
Ph.D. in biomedical engineering
Most Relevant Research Interests
Computer Science Applications
Software
Other Research Interests (30)
Biomedical Optics
NIRS
fNIRS
Diffuse Correlation Spectroscopy
CBF
And 25 more
About
Dr. Daniel Milej is a multidisciplinary researcher with experience in medical biophysics, electronics, biocybernetics, biomedical optics and engineering. He is highly knowledgeable and experienced in a range of research techniques. He is currently a Research Associate at the Lawson Health Research Institute, leading the transition of multimodal optical imaging systems from a research setting to clinical use in an ICU and OR environment, working closely with teams of nurses, surgeons, doctors and respiratory therapists. Previously he was a postdoctoral fellow working on developing noninvasive modalities for brain activity monitoring in the Department of Medical Biophysics at Western University. Before that, Dr. Milej worked as a researcher at the Nalecz Institute of Biocybernetics and Biomedical Engineering. He obtained his Ph.D. in 2014 from the Polish Academy of Science, specializing in Electronics and Biomedical Engineering. He received his MSc from the Military University of Technology in 2008.
Most Relevant Publications (1+)

91 total publications

Analysis of estimation of optical properties of sub superficial structures in multi layered tissue model using distribution function method

Computer Methods and Programs in Biomedicine / Jan 01, 2020

Żołek, N., Rix, H., & Botwicz, M. (2020). Analysis of estimation of optical properties of sub superficial structures in multi layered tissue model using distribution function method. Computer Methods and Programs in Biomedicine, 183, 105084. https://doi.org/10.1016/j.cmpb.2019.105084

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Ajay Badhan

Lethbridge, Alberta, Canada
Research Biologist, Lethbridge Research Center, Canada
Most Relevant Research Interests
Computer Science Applications
Other Research Interests (26)
Animal nutrition
cell wall biosynthesis and its deconstruction
biofuels
Waste Management and Disposal
Renewable Energy, Sustainability and the Environment
And 21 more
About
I am a proficient researcher with valuable research and teaching experience acquired at distinguished institutes like Complex Carbohydrate Research Center, US, University of Alberta, Canada, and Lethbridge Research Center (AAFC), Canada. I have been working for past 15 years on multiple projects focused on the economical, environmental and social sustainability of agricultural production. Improvement in livestock performance, productivity, and health by unlocking the microbiome, development of clean technologies, improving agriculture environmental performance, and Increase agro-ecosystem resilience are prime objectives for my research.
Most Relevant Publications (1+)

29 total publications

Mechanistic insights into the digestion of complex dietary fibre by the rumen microbiota using combinatorial high-resolution glycomics and transcriptomic analyses

Computational and Structural Biotechnology Journal / Jan 01, 2022

Badhan, A., Low, K. E., Jones, D. R., Xing, X., Milani, M. R. M., Polo, R. O., Klassen, L., Venketachalam, S., Hahn, M. G., Abbott, D. W., & McAllister, T. A. (2022). Mechanistic insights into the digestion of complex dietary fibre by the rumen microbiota using combinatorial high-resolution glycomics and transcriptomic analyses. Computational and Structural Biotechnology Journal, 20, 148–164. https://doi.org/10.1016/j.csbj.2021.12.009

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Siddharth Maddali

Fremont, California, United States of America
Computational physicist with a specialization in X-ray and optical imaging and microscopy for condensed matter and materials systems.
Most Relevant Research Interests
Modeling and Simulation
Computer Science Applications
Other Research Interests (20)
Computational microscopy
Fourier/physical optics
signal processing
physics
HPC
And 15 more
About
Computational materials, imaging and microscopy scientist with **8 years combined experience** in industry and national laboratories. Expert in physics-based imaging and characterization with X-rays and optical probes, high-performance computing for light-matter interaction and materials data analysis. Experienced in machine learning for materials discovery. Previous experience at the National Energy Technology Laboratory, Argonne National Laboratory and KLA Corporation. <br>
Most Relevant Publications (1+)

29 total publications

Concurrent multi-peak Bragg coherent x-ray diffraction imaging of 3D nanocrystal lattice displacement via global optimization

npj Computational Materials / May 23, 2023

Maddali, S., Frazer, T. D., Delegan, N., Harmon, K. J., Sullivan, S. E., Allain, M., Cha, W., Dibos, A., Poudyal, I., Kandel, S., Nashed, Y. S. G., Heremans, F. J., You, H., Cao, Y., & Hruszkewycz, S. O. (2023). Concurrent multi-peak Bragg coherent x-ray diffraction imaging of 3D nanocrystal lattice displacement via global optimization. Npj Computational Materials, 9(1). https://doi.org/10.1038/s41524-023-01022-7

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Jeffrey Townsend

New Haven, CT
Professor of Biostatistics and Ecology & Evolutionary Biology
Most Relevant Research Interests
Computer Science Applications
Information Systems
Computational Theory and Mathematics
Modeling and Simulation
Other Research Interests (49)
Evolutionary Genomics
Microbiology
Infectious Diseases
Genetics
Cell Biology
And 44 more
About
Jeffrey Townsend is a Professor of Organismic and Evolutionary Biology at Yale University. He received his Ph.D. from Harvard University in 2002 and his Sc.B. from Brown University in 1994. He has been a teacher at St. Ann's School and an Assistant Professor at the University of Connecticut. He is currently the Elihu Professor of Biostatistics at Yale University.
Most Relevant Publications (12+)

207 total publications

Secondary Metabolism Gene Clusters Exhibit Increasingly Dynamic and Differential Expression during Asexual Growth, Conidiation, and Sexual Development in Neurospora crassa

mSystems / Jun 28, 2022

Wang, Z., Lopez-Giraldez, F., Slot, J., Yarden, O., Trail, F., & Townsend, J. P. (2022). Secondary Metabolism Gene Clusters Exhibit Increasingly Dynamic and Differential Expression during Asexual Growth, Conidiation, and Sexual Development in Neurospora crassa. MSystems, 7(3). https://doi.org/10.1128/msystems.00232-22

Mechanistic basis of post-treatment control of SIV after anti-α4β7 antibody therapy

PLOS Computational Biology / Jun 09, 2021

Wells, C. R., Cao, Y., Durham, D. P., Byrareddy, S. N., Ansari, A. A., Ruddle, N. H., Townsend, J. P., Galvani, A. P., & Perelson, A. S. (2021). Mechanistic basis of post-treatment control of SIV after anti-α4β7 antibody therapy. PLOS Computational Biology, 17(6), e1009031. https://doi.org/10.1371/journal.pcbi.1009031

Identifying modules of cooperating cancer drivers

Molecular Systems Biology / Mar 01, 2021

Klein, M. I., Cannataro, V. L., Townsend, J. P., Newman, S., Stern, D. F., & Zhao, H. (2021). Identifying modules of cooperating cancer drivers. Molecular Systems Biology, 17(3). Portico. https://doi.org/10.15252/msb.20209810

PathScore: a web tool for identifying altered pathways in cancer data

Bioinformatics / Aug 08, 2016

Gaffney, S. G., & Townsend, J. P. (2016). PathScore: a web tool for identifying altered pathways in cancer data. Bioinformatics, 32(23), 3688–3690. https://doi.org/10.1093/bioinformatics/btw512

AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification

Bioinformatics / Jun 03, 2013

Dai, L., Tian, M., Wu, J., Xiao, J., Wang, X., Townsend, J. P., & Zhang, Z. (2013). AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification. Bioinformatics, 29(14), 1837–1839. https://doi.org/10.1093/bioinformatics/btt284

Codon Deviation Coefficient: a novel measure for estimating codon usage bias and its statistical significance

BMC Bioinformatics / Mar 22, 2012

Zhang, Z., Li, J., Cui, P., Ding, F., Li, A., Townsend, J. P., & Yu, J. (2012). Codon Deviation Coefficient: a novel measure for estimating codon usage bias and its statistical significance. BMC Bioinformatics, 13(1). https://doi.org/10.1186/1471-2105-13-43

LOX: inferring Level Of eXpression from diverse methods of census sequencing

Bioinformatics / Jun 10, 2010

Zhang, Z., López-Giráldez, F., & Townsend, J. P. (2010). LOX: inferring Level Of eXpression from diverse methods of census sequencing. Bioinformatics, 26(15), 1918–1919. https://doi.org/10.1093/bioinformatics/btq303

Maximum-Likelihood Model Averaging To Profile Clustering of Site Types across Discrete Linear Sequences

PLoS Computational Biology / Jun 26, 2009

Zhang, Z., & Townsend, J. P. (2009). Maximum-Likelihood Model Averaging To Profile Clustering of Site Types across Discrete Linear Sequences. PLoS Computational Biology, 5(6), e1000421. https://doi.org/10.1371/journal.pcbi.1000421

Article Commentary: Snapshots of Tree Space

Evolutionary Bioinformatics / Jan 01, 2009

Wang, Z., López-Giréidez, F., & Townsend, J. P. (2009). Article Commentary: Snapshots of Tree Space. Evolutionary Bioinformatics, 5, EBO.S3416. https://doi.org/10.4137/ebo.s3416

Bringing Web 2.0 to bioinformatics

Briefings in Bioinformatics / Oct 08, 2008

Zhang, Z., Cheung, K.-H., & Townsend, J. P. (2008). Bringing Web 2.0 to bioinformatics. Briefings in Bioinformatics, 10(1), 1–10. https://doi.org/10.1093/bib/bbn041

HCLS 2.0/3.0: Health care and life sciences data mashup using Web 2.0/3.0

Journal of Biomedical Informatics / Oct 01, 2008

Cheung, K.-H., Yip, K. Y., Townsend, J. P., & Scotch, M. (2008). HCLS 2.0/3.0: Health care and life sciences data mashup using Web 2.0/3.0. Journal of Biomedical Informatics, 41(5), 694–705. https://doi.org/10.1016/j.jbi.2008.04.001

A Bayesian method for analysing spotted microarray data

Briefings in Bioinformatics / Jan 01, 2005

Meiklejohn, C. D., & Townsend, J. P. (2005). A Bayesian method for analysing spotted microarray data. Briefings in Bioinformatics, 6(4), 318–330. https://doi.org/10.1093/bib/6.4.318

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