Experts and Thought Leaders in Life Sciences
Dushani L. Palliyaguru, Ph.D.
Toxicologist | Aging, Nutrition and Metabolism Research Scientist | Systems Biologist
Most Relevant Research Expertise
Other Research Expertise (10)
About
Most Relevant Publications (12+)
20 total publications
Notch-Nrf2 Axis: Regulation of Nrf2 Gene Expression and Cytoprotection by Notch Signaling
Molecular and Cellular Biology / Feb 15, 2014
Wakabayashi, N., Skoko, J. J., Chartoumpekis, D. V., Kimura, S., Slocum, S. L., Noda, K., Palliyaguru, D. L., Fujimuro, M., Boley, P. A., Tanaka, Y., Shigemura, N., Biswal, S., Yamamoto, M., & Kensler, T. W. (2014). Notch-Nrf2 Axis: Regulation of Nrf2 Gene Expression and Cytoprotection by Notch Signaling. Molecular and Cellular Biology, 34(4), 653–663. https://doi.org/10.1128/mcb.01408-13
Isothiocyanates: Translating the Power of Plants to People
Molecular Nutrition & Food Research / Mar 26, 2018
Palliyaguru, D. L., Yuan, J.-M., Kensler, T. W., & Fahey, J. W. (2018). Isothiocyanates: Translating the Power of Plants to People. Molecular Nutrition & Food Research, 62(18), 1700965. Portico. https://doi.org/10.1002/mnfr.201700965
Withania somnifera : From prevention to treatment of cancer
Molecular Nutrition & Food Research / Jan 29, 2016
Palliyaguru, D. L., Singh, S. V., & Kensler, T. W. (2016). Withania somnifera : From prevention to treatment of cancer. Molecular Nutrition & Food Research, 60(6), 1342–1353. Portico. https://doi.org/10.1002/mnfr.201500756
Frailty index as a biomarker of lifespan and healthspan: Focus on pharmacological interventions
Mechanisms of Ageing and Development / Jun 01, 2019
Palliyaguru, D. L., Moats, J. M., Di Germanio, C., Bernier, M., & de Cabo, R. (2019). Frailty index as a biomarker of lifespan and healthspan: Focus on pharmacological interventions. Mechanisms of Ageing and Development, 180, 42–48. https://doi.org/10.1016/j.mad.2019.03.005
Global geographical overlap of aflatoxin and hepatitis C: controlling risk factors for liver cancer worldwide
Food Additives & Contaminants: Part A / Mar 01, 2013
Palliyaguru, D. L., & Wu, F. (2013). Global geographical overlap of aflatoxin and hepatitis C: controlling risk factors for liver cancer worldwide. Food Additives & Contaminants: Part A, 30(3), 534–540. https://doi.org/10.1080/19440049.2012.751630
Nrf2 deletion from adipocytes, but not hepatocytes, potentiates systemic metabolic dysfunction after long-term high-fat diet-induced obesity in mice
American Journal of Physiology-Endocrinology and Metabolism / Aug 01, 2018
Chartoumpekis, D. V., Palliyaguru, D. L., Wakabayashi, N., Fazzari, M., Khoo, N. K. H., Schopfer, F. J., Sipula, I., Yagishita, Y., Michalopoulos, G. K., O’Doherty, R. M., & Kensler, T. W. (2018). Nrf2 deletion from adipocytes, but not hepatocytes, potentiates systemic metabolic dysfunction after long-term high-fat diet-induced obesity in mice. American Journal of Physiology-Endocrinology and Metabolism, 315(2), E180–E195. https://doi.org/10.1152/ajpendo.00311.2017
Notch intracellular domain overexpression in adipocytes confers lipodystrophy in mice
Molecular Metabolism / Jul 01, 2015
Chartoumpekis, D. V., Palliyaguru, D. L., Wakabayashi, N., Khoo, N. K. H., Schoiswohl, G., O’Doherty, R. M., & Kensler, T. W. (2015). Notch intracellular domain overexpression in adipocytes confers lipodystrophy in mice. Molecular Metabolism, 4(7), 543–550. https://doi.org/10.1016/j.molmet.2015.04.004
Study of Longitudinal Aging in Mice: Presentation of Experimental Techniques
The Journals of Gerontology: Series A / Dec 18, 2020
Palliyaguru, D. L., Vieira Ligo Teixeira, C., Duregon, E., di Germanio, C., Alfaras, I., Mitchell, S. J., Navas-Enamorado, I., Shiroma, E. J., Studenski, S., Bernier, M., Camandola, S., Price, N. L., Ferrucci, L., & de Cabo, R. (2020). Study of Longitudinal Aging in Mice: Presentation of Experimental Techniques. The Journals of Gerontology: Series A, 76(4), 552–560. https://doi.org/10.1093/gerona/glaa285
Fasting blood glucose as a predictor of mortality: Lost in translation
Cell Metabolism / Nov 01, 2021
Palliyaguru, D. L., Shiroma, E. J., Nam, J. K., Duregon, E., Vieira Ligo Teixeira, C., Price, N. L., Bernier, M., Camandola, S., Vaughan, K. L., Colman, R. J., Deighan, A., Korstanje, R., Peters, L. L., Dickinson, S. L., Ejima, K., Simonsick, E. M., Launer, L. J., Chia, C. W., Egan, J., … de Cabo, R. (2021). Fasting blood glucose as a predictor of mortality: Lost in translation. Cell Metabolism, 33(11), 2189-2200.e3. https://doi.org/10.1016/j.cmet.2021.08.013
Combining a High Dose of Metformin With the SIRT1 Activator, SRT1720, Reduces Life Span in Aged Mice Fed a High-Fat Diet
The Journals of Gerontology: Series A / Jun 18, 2020
Palliyaguru, D. L., Minor, R. K., Mitchell, S. J., Palacios, H. H., Licata, J. J., Ward, T. M., Abulwerdi, G., Elliott, P., Westphal, C., Ellis, J. L., Sinclair, D. A., Price, N. L., Bernier, M., & de Cabo, R. (2020). Combining a High Dose of Metformin With the SIRT1 Activator, SRT1720, Reduces Life Span in Aged Mice Fed a High-Fat Diet. The Journals of Gerontology: Series A, 75(11), 2037–2041. https://doi.org/10.1093/gerona/glaa148
Perinatal diet influences health and survival in a mouse model of leukemia
GeroScience / May 11, 2020
Palliyaguru, D. L., Rudderow, A. L., Sossong, A. M., Lewis, K. N., Younts, C., Pearson, K. J., Bernier, M., & de Cabo, R. (2020). Perinatal diet influences health and survival in a mouse model of leukemia. GeroScience, 42(4), 1147–1155. https://doi.org/10.1007/s11357-020-00199-9
Evaluation of 2-Thiothiazolidine-4-Carboxylic Acid, a Common Metabolite of Isothiocyanates, as a Potential Biomarker of Cruciferous Vegetable Intake
Molecular Nutrition & Food Research / Nov 22, 2018
Palliyaguru, D. L., Salvatore, S. R., Schopfer, F. J., Cheng, X., Zhou, J., Kensler, T. W., & Wendell, S. G. (2018). Evaluation of 2-Thiothiazolidine-4-Carboxylic Acid, a Common Metabolite of Isothiocyanates, as a Potential Biomarker of Cruciferous Vegetable Intake. Molecular Nutrition & Food Research, 63(3), 1801029. Portico. https://doi.org/10.1002/mnfr.201801029
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Elvira Forte
Scientific strategist • Senior Scientist • Senior Scientific Editor
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Other Research Expertise (18)
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Most Relevant Publications (27+)
63 total publications
Fibroblasts: Origins, definitions, and functions in health and disease
Cell / Jul 01, 2021
Plikus, M. V., Wang, X., Sinha, S., Forte, E., Thompson, S. M., Herzog, E. L., Driskell, R. R., Rosenthal, N., Biernaskie, J., & Horsley, V. (2021). Fibroblasts: Origins, definitions, and functions in health and disease. Cell, 184(15), 3852–3872. https://doi.org/10.1016/j.cell.2021.06.024
Differentiation of human adult cardiac stem cells exposed to extremely low-frequency electromagnetic fields
Cardiovascular Research / Feb 19, 2009
Gaetani, R., Ledda, M., Barile, L., Chimenti, I., De Carlo, F., Forte, E., Ionta, V., Giuliani, L., D’Emilia, E., Frati, G., Miraldi, F., Pozzi, D., Messina, E., Grimaldi, S., Giacomello, A., & Lisi, A. (2009). Differentiation of human adult cardiac stem cells exposed to extremely low-frequency electromagnetic fields. Cardiovascular Research, 82(3), 411–420. https://doi.org/10.1093/cvr/cvp067
Single cell sequencing reveals endothelial plasticity with transient mesenchymal activation after myocardial infarction
Nature Communications / Jan 29, 2021
Tombor, L. S., John, D., Glaser, S. F., Luxán, G., Forte, E., Furtado, M., Rosenthal, N., Baumgarten, N., Schulz, M. H., Wittig, J., Rogg, E.-M., Manavski, Y., Fischer, A., Muhly-Reinholz, M., Klee, K., Looso, M., Selignow, C., Acker, T., Bibli, S.-I., … Dimmeler, S. (2021). Single cell sequencing reveals endothelial plasticity with transient mesenchymal activation after myocardial infarction. Nature Communications, 12(1). https://doi.org/10.1038/s41467-021-20905-1
Dynamic Interstitial Cell Response during Myocardial Infarction Predicts Resilience to Rupture in Genetically Diverse Mice
Cell Reports / Mar 01, 2020
Forte, E., Skelly, D. A., Chen, M., Daigle, S., Morelli, K. A., Hon, O., Philip, V. M., Costa, M. W., Rosenthal, N. A., & Furtado, M. B. (2020). Dynamic Interstitial Cell Response during Myocardial Infarction Predicts Resilience to Rupture in Genetically Diverse Mice. Cell Reports, 30(9), 3149-3163.e6. https://doi.org/10.1016/j.celrep.2020.02.008
Developmental origin and lineage plasticity of endogenous cardiac stem cells
Development / Apr 15, 2016
Santini, M. P., Forte, E., Harvey, R. P., & Kovacic, J. C. (2016). Developmental origin and lineage plasticity of endogenous cardiac stem cells. Development, 143(8), 1242–1258. https://doi.org/10.1242/dev.111591
Developmental origins and lineage descendants of endogenous adult cardiac progenitor cells
Stem Cell Research / Nov 01, 2014
Chong, J. J. H., Forte, E., & Harvey, R. P. (2014). Developmental origins and lineage descendants of endogenous adult cardiac progenitor cells. Stem Cell Research, 13(3), 592–614. https://doi.org/10.1016/j.scr.2014.09.008
Serum and supplement optimization
for EU GMP ‐compliance
in cardiospheres cell culture
Journal of Cellular and Molecular Medicine / Jan 20, 2014
Chimenti, I., Gaetani, R., Forte, E., Angelini, F., De Falco, E., Zoccai, G. B., Messina, E., Frati, G., & Giacomello, A. (2014). Serum and supplement optimization for <scp>EU GMP</scp>‐compliance in cardiospheres cell culture. Journal of Cellular and Molecular Medicine, 18(4), 624–634. Portico. https://doi.org/10.1111/jcmm.12210
Cardiospheres and tissue engineering for myocardial regeneration: potential for clinical application
Journal of Cellular and Molecular Medicine / May 01, 2010
Gaetani, R., Rizzitelli, G., Chimenti, I., Barile, L., Forte, E., Ionta, V., Angelini, F., Sluijter, J. P. G., Barbetta, A., Messina, E., & Frati, G. (2010). Cardiospheres and tissue engineering for myocardial regeneration: potential for clinical application. Journal of Cellular and Molecular Medicine, no-no. https://doi.org/10.1111/j.1582-4934.2010.01078.x
TGFβ-Dependent Epithelial-to-Mesenchymal Transition Is Required to Generate Cardiospheres from Human Adult Heart Biopsies
Stem Cells and Development / Nov 20, 2012
Forte, E., Miraldi, F., Chimenti, I., Angelini, F., Zeuner, A., Giacomello, A., Mercola, M., & Messina, E. (2012). TGFβ-Dependent Epithelial-to-Mesenchymal Transition Is Required to Generate Cardiospheres from Human Adult Heart Biopsies. Stem Cells and Development, 21(17), 3081–3090. https://doi.org/10.1089/scd.2012.0277
Different types of cultured human adult Cardiac Progenitor Cells have a high degree of transcriptome similarity
Journal of Cellular and Molecular Medicine / Oct 14, 2014
Gaetani, R., Feyen, D. A. M., Doevendans, P. A., Gremmels, H., Forte, E., Fledderus, J. O., Ramjankhan, F. Z., Messina, E., Sussman, M. A., Giacomello, A., & Sluijter, J. P. G. (2014). Different types of cultured human adult Cardiac Progenitor Cells have a high degree of transcriptome similarity. Journal of Cellular and Molecular Medicine, 18(11), 2147–2151. Portico. https://doi.org/10.1111/jcmm.12458
Cardiac Cell Therapy: The Next (Re)Generation
Stem Cell Reviews and Reports / Mar 25, 2011
Forte, E., Chimenti, I., Barile, L., Gaetani, R., Angelini, F., Ionta, V., Messina, E., & Giacomello, A. (2011). Cardiac Cell Therapy: The Next (Re)Generation. Stem Cell Reviews and Reports, 7(4), 1018–1030. https://doi.org/10.1007/s12015-011-9252-8
Bone marrow‐derived cells can acquire cardiac stem cells properties in damaged heart
Journal of Cellular and Molecular Medicine / Jan 01, 2011
Barile, L., Cerisoli, F., Frati, G., Gaetani, R., Chimenti, I., Forte, E., Cassinelli, L., Spinardi, L., Altomare, C., Kizana, E., Giacomello, A., Messina, E., Ottolenghi, S., & Magli, M. C. (2011). Bone marrow‐derived cells can acquire cardiac stem cells properties in damaged heart. Journal of Cellular and Molecular Medicine, 15(1), 63–71. Portico. https://doi.org/10.1111/j.1582-4934.2009.00968.x
A Chemical Biology Approach to Myocardial Regeneration
Journal of Cardiovascular Translational Research / Mar 22, 2011
Willems, E., Lanier, M., Forte, E., Lo, F., Cashman, J., & Mercola, M. (2011). A Chemical Biology Approach to Myocardial Regeneration. Journal of Cardiovascular Translational Research, 4(3), 340–350. https://doi.org/10.1007/s12265-011-9270-6
Type 2 MI induced by a single high dose of isoproterenol in C57BL/6J mice triggers a persistent adaptive immune response against the heart
Journal of Cellular and Molecular Medicine / Nov 29, 2020
Forte, E., Panahi, M., Baxan, N., Ng, F. S., Boyle, J. J., Branca, J., Bedard, O., Hasham, M. G., Benson, L., Harding, S. E., Rosenthal, N., & Sattler, S. (2020). Type 2 MI induced by a single high dose of isoproterenol in C57BL/6J mice triggers a persistent adaptive immune response against the heart. Journal of Cellular and Molecular Medicine, 25(1), 229–243. Portico. https://doi.org/10.1111/jcmm.15937
Adult mouse fibroblasts retain organ-specific transcriptomic identity
eLife / Mar 16, 2022
Forte, E., Ramialison, M., Nim, H. T., Mara, M., Li, J. Y., Cohn, R., Daigle, S. L., Boyd, S., Stanley, E. G., Elefanty, A. G., Hinson, J. T., Costa, M. W., Rosenthal, N. A., & Furtado, M. B. (2022). Adult mouse fibroblasts retain organ-specific transcriptomic identity. ELife, 11. CLOCKSS. https://doi.org/10.7554/elife.71008
Metformin intervention prevents cardiac dysfunction in a murine model of adult congenital heart disease
Molecular Metabolism / Feb 01, 2019
Wilmanns, J. C., Pandey, R., Hon, O., Chandran, A., Schilling, J. M., Forte, E., Wu, Q., Cagnone, G., Bais, P., Philip, V., Coleman, D., Kocalis, H., Archer, S. K., Pearson, J. T., Ramialison, M., Heineke, J., Patel, H. H., Rosenthal, N. A., Furtado, M. B., & Costa, M. W. (2019). Metformin intervention prevents cardiac dysfunction in a murine model of adult congenital heart disease. Molecular Metabolism, 20, 102–114. https://doi.org/10.1016/j.molmet.2018.11.002
Continuous Subcutaneous Insulin Infusion in Italy: Third National Survey
Diabetes Technology & Therapeutics / Feb 01, 2015
Bruttomesso, D., Laviola, L., Lepore, G., Bonfanti, R., Bozzetto, L., Corsi, A., Di Blasi, V., Girelli, A., Grassi, G., Iafusco, D., Rabbone, I., & Schiaffini, R. (2015). Continuous Subcutaneous Insulin Infusion in Italy: Third National Survey. Diabetes Technology & Therapeutics, 17(2), 96–104. https://doi.org/10.1089/dia.2014.0242
Biochemistry and biology: Heart-to-heart to investigate cardiac progenitor cells
Biochimica et Biophysica Acta (BBA) - General Subjects / Feb 01, 2013
Chimenti, I., Forte, E., Angelini, F., Messina, E., & Giacomello, A. (2013). Biochemistry and biology: Heart-to-heart to investigate cardiac progenitor cells. Biochimica et Biophysica Acta (BBA) - General Subjects, 1830(2), 2459–2469. https://doi.org/10.1016/j.bbagen.2012.08.004
Editorial: Fibrosis and Inflammation in Tissue Pathophysiology
Frontiers in Physiology / Jan 21, 2022
Chimenti, I., Sattler, S., del Monte-Nieto, G., & Forte, E. (2022). Editorial: Fibrosis and Inflammation in Tissue Pathophysiology. Frontiers in Physiology, 12. https://doi.org/10.3389/fphys.2021.830683
Protocol for Isolation of Cardiac Interstitial Cells from Adult Murine Hearts for Unbiased Single Cell Profiling
STAR Protocols / Sep 01, 2020
Forte, E., Daigle, S., & Rosenthal, N. A. (2020). Protocol for Isolation of Cardiac Interstitial Cells from Adult Murine Hearts for Unbiased Single Cell Profiling. STAR Protocols, 1(2), 100077. https://doi.org/10.1016/j.xpro.2020.100077
Genetically diverse mouse models of SARS-CoV-2 infection reproduce clinical variation in type I interferon and cytokine responses in COVID-19
Nature Communications / Jul 25, 2023
Robertson, S. J., Bedard, O., McNally, K. L., Shaia, C., Clancy, C. S., Lewis, M., Broeckel, R. M., Chiramel, A. I., Shannon, J. G., Sturdevant, G. L., Rosenke, R., Anzick, S. L., Forte, E., Preuss, C., Baker, C. N., Harder, J. M., Brunton, C., Munger, S., Bruno, D. P., … Best, S. M. (2023). Genetically diverse mouse models of SARS-CoV-2 infection reproduce clinical variation in type I interferon and cytokine responses in COVID-19. Nature Communications, 14(1). https://doi.org/10.1038/s41467-023-40076-5
HLA-DQ8 Supports Development of Insulitis Mediated by Insulin-Reactive Human TCR-Transgenic T Cells in Nonobese Diabetic Mice
The Journal of Immunology / Dec 15, 2023
Racine, J. J., Misherghi, A., Dwyer, J. R., Maser, R., Forte, E., Bedard, O., Sattler, S., Pugliese, A., Landry, L., Elso, C., Nakayama, M., Mannering, S., Rosenthal, N., & Serreze, D. V. (2023). HLA-DQ8 Supports Development of Insulitis Mediated by Insulin-Reactive Human TCR-Transgenic T Cells in Nonobese Diabetic Mice. The Journal of Immunology, 211(12), 1792–1805. https://doi.org/10.4049/jimmunol.2300303
Ex uno, plures–From One Tissue to Many Cells: A Review of Single-Cell Transcriptomics in Cardiovascular Biology
International Journal of Molecular Sciences / Feb 19, 2021
Forte, E., McLellan, M. A., Skelly, D. A., & Rosenthal, N. A. (2021). Ex uno, plures–From One Tissue to Many Cells: A Review of Single-Cell Transcriptomics in Cardiovascular Biology. International Journal of Molecular Sciences, 22(4), 2071. https://doi.org/10.3390/ijms22042071
Cardiac stem cells can be generated in damaged heart from bone marrow-derived cells
Journal of Molecular and Cellular Cardiology / Jun 01, 2007
Barile, L., Cerisoli, F., Gaetani, R., Forte, E., Ottolenghi, S., Magli, M. C., & Messina, E. (2007). Cardiac stem cells can be generated in damaged heart from bone marrow-derived cells. Journal of Molecular and Cellular Cardiology, 42(6), S100. https://doi.org/10.1016/j.yjmcc.2007.03.220
Murine MHC-Deficient Nonobese Diabetic Mice Carrying Human HLA-DQ8 Develop Severe Myocarditis and Myositis in Response to Anti–PD-1 Immune Checkpoint Inhibitor Cancer Therapy
The Journal of Immunology / Mar 01, 2024
Racine, J. J., Bachman, J. F., Zhang, J.-G., Misherghi, A., Khadour, R., Kaisar, S., Bedard, O., Jenkins, C., Abbott, A., Forte, E., Rainer, P., Rosenthal, N., Sattler, S., & Serreze, D. V. (2024). Murine MHC-Deficient Nonobese Diabetic Mice Carrying Human HLA-DQ8 Develop Severe Myocarditis and Myositis in Response to Anti–PD-1 Immune Checkpoint Inhibitor Cancer Therapy. The Journal of Immunology, 212(8), 1287–1306. https://doi.org/10.4049/jimmunol.2300841
Abstract 704: Profiling Differential Response to Myocardial Infarction by Single Cell Analysis of the Cardiac Interstitium
Circulation Research / Aug 02, 2019
Forte, E. (2019). Abstract 704: Profiling Differential Response to Myocardial Infarction by Single Cell Analysis of the Cardiac Interstitium. Circulation Research, 125(Suppl_1). https://doi.org/10.1161/res.125.suppl_1.704
Abstract 12: Physiological Role of Endogenous Adult Cardiac Colony-forming Unit Fibroblasts
Circulation Research / Jul 17, 2015
Forte, E., Janbandhu, V., Asli, N. S., Cornwell, J., Abeygunawardena, D., Xaymardan, M., & Harvey, R. P. (2015). Abstract 12: Physiological Role of Endogenous Adult Cardiac Colony-forming Unit Fibroblasts. Circulation Research, 117(suppl_1). https://doi.org/10.1161/res.117.suppl_1.12
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THANGASAMY SAMINATHAN
I have mix of expertise in Molecular Biology, Mapping and Functional Genomics, and Groundwater Remediation
Most Relevant Research Expertise
Other Research Expertise (5)
About
Most Relevant Publications (17+)
29 total publications
Single nucleotide polymorphisms generated by genotyping by sequencing to characterize genome-wide diversity, linkage disequilibrium, and selective sweeps in cultivated watermelon
BMC Genomics / Sep 08, 2014
Nimmakayala, P., Levi, A., Abburi, L., Abburi, V. L., Tomason, Y. R., Saminathan, T., Vajja, V. G., Malkaram, S., Reddy, R., Wehner, T. C., Mitchell, S. E., & Reddy, U. K. (2014). Single nucleotide polymorphisms generated by genotyping by sequencing to characterize genome-wide diversity, linkage disequilibrium, and selective sweeps in cultivated watermelon. BMC Genomics, 15(1). https://doi.org/10.1186/1471-2164-15-767
Rice SIZ1, a SUMO E3 ligase, controls spikelet fertility through regulation of anther dehiscence
New Phytologist / Nov 16, 2010
Thangasamy, S., Guo, C., Chuang, M., Lai, M., Chen, J., & Jauh, G. (2010). Rice SIZ1, a SUMO E3 ligase, controls spikelet fertility through regulation of anther dehiscence. New Phytologist, 189(3), 869–882. Portico. https://doi.org/10.1111/j.1469-8137.2010.03538.x
Metagenomic and Metatranscriptomic Analyses of Diverse Watermelon Cultivars Reveal the Role of Fruit Associated Microbiome in Carbohydrate Metabolism and Ripening of Mature Fruits
Frontiers in Plant Science / Jan 19, 2018
Saminathan, T., García, M., Ghimire, B., Lopez, C., Bodunrin, A., Nimmakayala, P., Abburi, V. L., Levi, A., Balagurusamy, N., & Reddy, U. K. (2018). Metagenomic and Metatranscriptomic Analyses of Diverse Watermelon Cultivars Reveal the Role of Fruit Associated Microbiome in Carbohydrate Metabolism and Ripening of Mature Fruits. Frontiers in Plant Science, 9. https://doi.org/10.3389/fpls.2018.00004
Genome-wide identification of microRNAs in pomegranate (Punica granatum L.) by high-throughput sequencing
BMC Plant Biology / May 26, 2016
Saminathan, T., Bodunrin, A., Singh, N. V., Devarajan, R., Nimmakayala, P., Jeff, M., Aradhya, M., & Reddy, U. K. (2016). Genome-wide identification of microRNAs in pomegranate (Punica granatum L.) by high-throughput sequencing. BMC Plant Biology, 16(1). https://doi.org/10.1186/s12870-016-0807-3
Differential gene expression and alternative splicing between diploid and tetraploid watermelon
Journal of Experimental Botany / Dec 17, 2014
Saminathan, T., Nimmakayala, P., Manohar, S., Malkaram, S., Almeida, A., Cantrell, R., Tomason, Y., Abburi, L., Rahman, M. A., Vajja, V. G., Khachane, A., Kumar, B., Rajasimha, H. K., Levi, A., Wehner, T., & Reddy, U. K. (2014). Differential gene expression and alternative splicing between diploid and tetraploid watermelon. Journal of Experimental Botany, 66(5), 1369–1385. https://doi.org/10.1093/jxb/eru486
Genetic diversity and association mapping of bacterial blight and other horticulturally important traits with microsatellite markers in pomegranate from India
Molecular Genetics and Genomics / Feb 13, 2015
Singh, N. V., Abburi, V. L., Ramajayam, D., Kumar, R., Chandra, R., Sharma, K. K., Sharma, J., Babu, K. D., Pal, R. K., Mundewadikar, D. M., Saminathan, T., Cantrell, R., Nimmakayala, P., & Reddy, U. K. (2015). Genetic diversity and association mapping of bacterial blight and other horticulturally important traits with microsatellite markers in pomegranate from India. Molecular Genetics and Genomics, 290(4), 1393–1402. https://doi.org/10.1007/s00438-015-1003-0
Genome-Wide Differentiation of Various Melon Horticultural Groups for Use in GWAS for Fruit Firmness and Construction of a High Resolution Genetic Map
Frontiers in Plant Science / Sep 22, 2016
Nimmakayala, P., Tomason, Y. R., Abburi, V. L., Alvarado, A., Saminathan, T., Vajja, V. G., Salazar, G., Panicker, G. K., Levi, A., Wechter, W. P., McCreight, J. D., Korol, A. B., Ronin, Y., Garcia-Mas, J., & Reddy, U. K. (2016). Genome-Wide Differentiation of Various Melon Horticultural Groups for Use in GWAS for Fruit Firmness and Construction of a High Resolution Genetic Map. Frontiers in Plant Science, 7. https://doi.org/10.3389/fpls.2016.01437
High-Resolution Genetic Map for Understanding the Effect of Genome-Wide Recombination Rate on Nucleotide Diversity in Watermelon
G3 Genes|Genomes|Genetics / Nov 01, 2014
Reddy, U. K., Nimmakayala, P., Levi, A., Abburi, V. L., Saminathan, T., Tomason, Y. R., Vajja, G., Reddy, R., Abburi, L., Wehner, T. C., Ronin, Y., & Karol, A. (2014). High-Resolution Genetic Map for Understanding the Effect of Genome-Wide Recombination Rate on Nucleotide Diversity in Watermelon. G3 Genes|Genomes|Genetics, 4(11), 2219–2230. https://doi.org/10.1534/g3.114.012815
A Genome-Wide Scan of Selective Sweeps and Association Mapping of Fruit Traits Using Microsatellite Markers in Watermelon
Journal of Heredity / Nov 25, 2014
Reddy, U. K., Abburi, L., Abburi, V. L., Saminathan, T., Cantrell, R., Vajja, V. G., Reddy, R., Tomason, Y. R., Levi, A., Wehner, T. C., & Nimmakayala, P. (2014). A Genome-Wide Scan of Selective Sweeps and Association Mapping of Fruit Traits Using Microsatellite Markers in Watermelon. Journal of Heredity, 106(2), 166–176. https://doi.org/10.1093/jhered/esu077
Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters
The Plant Journal / May 25, 2012
Thangasamy, S., Chen, P., Lai, M., Chen, J., & Jauh, G. (2012). Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters. The Plant Journal, 71(2), 288–302. Portico. https://doi.org/10.1111/j.1365-313x.2012.04989.x
Genome-Wide Divergence and Linkage Disequilibrium Analyses for Capsicum baccatum Revealed by Genome-Anchored Single Nucleotide Polymorphisms
Frontiers in Plant Science / Nov 03, 2016
Nimmakayala, P., Abburi, V. L., Saminathan, T., Almeida, A., Davenport, B., Davidson, J., Reddy, C. V. C. M., Hankins, G., Ebert, A., Choi, D., Stommel, J., & Reddy, U. K. (2016). Genome-Wide Divergence and Linkage Disequilibrium Analyses for Capsicum baccatum Revealed by Genome-Anchored Single Nucleotide Polymorphisms. Frontiers in Plant Science, 7. https://doi.org/10.3389/fpls.2016.01646
Elevated carbon dioxide and drought modulate physiology and storage-root development in sweet potato by regulating microRNAs
Functional & Integrative Genomics / Sep 22, 2018
Saminathan, T., Alvarado, A., Lopez, C., Shinde, S., Gajanayake, B., Abburi, V. L., Vajja, V. G., Jagadeeswaran, G., Raja Reddy, K., Nimmakayala, P., & Reddy, U. K. (2018). Elevated carbon dioxide and drought modulate physiology and storage-root development in sweet potato by regulating microRNAs. Functional & Integrative Genomics, 19(1), 171–190. https://doi.org/10.1007/s10142-018-0635-7
Genome-Wide Association Study of Natural Variation in Arabidopsis Exposed to Acid Mine Drainage Toxicity and Validation of Associated Genes with Reverse Genetics
Plants / Jan 20, 2021
Ghimire, B., Saminathan, T., Bodunrin, A., Abburi, V. L., Kshetry, A. O., Shinde, S., Nimmakayala, P., & Reddy, U. K. (2021). Genome-Wide Association Study of Natural Variation in Arabidopsis Exposed to Acid Mine Drainage Toxicity and Validation of Associated Genes with Reverse Genetics. Plants, 10(2), 191. https://doi.org/10.3390/plants10020191
Transcriptome Analysis of Cambium Tissue of Paulownia Collected during Winter and Spring
Diversity / Sep 01, 2021
Perry, Z. D., Saminathan, T., Arun, A., Vaidya, B. N., Basu, C., Reddy, U. K., & Joshee, N. (2021). Transcriptome Analysis of Cambium Tissue of Paulownia Collected during Winter and Spring. Diversity, 13(9), 423. https://doi.org/10.3390/d13090423
Stress responses and comparative transcriptome analysis of Arabidopsis thaliana ecotypes exposed to BTEX compounds
Environmental and Experimental Botany / Sep 01, 2022
Pacheco-Valenciana, A., Lopez-Ortiz, C., Natarajan, P., Saminathan, T., Nimmakayala, P., & Reddy, U. K. (2022). Stress responses and comparative transcriptome analysis of Arabidopsis thaliana ecotypes exposed to BTEX compounds. Environmental and Experimental Botany, 201, 104953. https://doi.org/10.1016/j.envexpbot.2022.104953
Northwestern Blot of Protein-RNA Interaction from Young Rice Panicles
BIO-PROTOCOL / Jan 01, 2013
Thangasamy, S., & Jauh, G.-Y. (2013). Northwestern Blot of Protein-RNA Interaction from Young Rice Panicles. BIO-PROTOCOL, 3(7). https://doi.org/10.21769/bioprotoc.625
Breeding behaviour for juice quality through selfing and progeny evaluation in hybrid clones and inbred derivatives of sugarcane (Saccharum sp.)
Sugar Tech / Sep 01, 2003
Hemaprabha, G., Natarajan, U. S., & Balasundaram, N. (2003). Breeding behaviour for juice quality through selfing and progeny evaluation in hybrid clones and inbred derivatives of sugarcane (Saccharum sp.). Sugar Tech, 5(3), 177–180. https://doi.org/10.1007/bf02943631
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Regan Hamel
Senior bioinformatics scientist, specializing in single cell omics in the context of cellular reprogramming and neuroinflammation
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12 total publications
Harnessing the Neural Stem Cell Secretome for Regenerative Neuroimmunology
Frontiers in Cellular Neuroscience / Nov 05, 2020
Willis, C. M., Nicaise, A. M., Hamel, R., Pappa, V., Peruzzotti-Jametti, L., & Pluchino, S. (2020). Harnessing the Neural Stem Cell Secretome for Regenerative Neuroimmunology. Frontiers in Cellular Neuroscience, 14. https://doi.org/10.3389/fncel.2020.590960
Stem Cell Therapies for Progressive Multiple Sclerosis
Frontiers in Cell and Developmental Biology / Jul 09, 2021
Smith, J. A., Nicaise, A. M., Ionescu, R.-B., Hamel, R., Peruzzotti-Jametti, L., & Pluchino, S. (2021). Stem Cell Therapies for Progressive Multiple Sclerosis. Frontiers in Cell and Developmental Biology, 9. https://doi.org/10.3389/fcell.2021.696434
Metabolic Control of Smoldering Neuroinflammation
Frontiers in Immunology / Jun 23, 2021
Peruzzotti-Jametti, L., Willis, C. M., Hamel, R., Krzak, G., & Pluchino, S. (2021). Metabolic Control of Smoldering Neuroinflammation. Frontiers in Immunology, 12. https://doi.org/10.3389/fimmu.2021.705920
Combination of In Situ Lcn2 pRNA-RNAi Nanotherapeutics and iNSC Transplantation Ameliorates Experimental SCI in Mice
Molecular Therapy / Dec 01, 2020
Braga, A., Bandiera, S., Verheyen, J., Hamel, R., Rutigliani, C., Edenhofer, F., Smith, J. A., & Pluchino, S. (2020). Combination of In Situ Lcn2 pRNA-RNAi Nanotherapeutics and iNSC Transplantation Ameliorates Experimental SCI in Mice. Molecular Therapy, 28(12), 2677–2690. https://doi.org/10.1016/j.ymthe.2020.08.001
Bioinformatics analysis identified apolipoprotein E as a hub gene regulating neuroinflammation in macrophages and microglia following spinal cord injury
Frontiers in Immunology / Aug 24, 2022
Yao, X.-Q., Chen, J.-Y., Yu, Z.-H., Huang, Z.-C., Hamel, R., Zeng, Y.-Q., Huang, Z.-P., Tu, K.-W., Liu, J.-H., Lu, Y.-M., Zhou, Z.-T., Pluchino, S., Zhu, Q.-A., & Chen, J.-T. (2022). Bioinformatics analysis identified apolipoprotein E as a hub gene regulating neuroinflammation in macrophages and microglia following spinal cord injury. Frontiers in Immunology, 13. https://doi.org/10.3389/fimmu.2022.964138
Single cell biology—a Keystone Symposia report
Annals of the New York Academy of Sciences / Oct 03, 2021
Cable, J., Elowitz, M. B., Domingos, A. I., Habib, N., Itzkovitz, S., Hamidzada, H., Balzer, M. S., Yanai, I., Liberali, P., Whited, J., Streets, A., Cai, L., Stergachis, A. B., Hong, C. K. Y., Keren, L., Guilliams, M., Alon, U., Shalek, A. K., Hamel, R., … Romeike, M. (2021). Single cell biology—a Keystone Symposia report. Annals of the New York Academy of Sciences, 1506(1), 74–97. Portico. https://doi.org/10.1111/nyas.14692
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Sarafa A. Akeem
Lecturer and Food Researcher with fifteen peer-reviewed publications in international journal outlets.
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11 total publications
Physicochemical Properties of Processed Aerial Yam (Dioscorea bulbifera) and Sensory Properties of Paste (Amala) Prepared with Cassava Flour
Journal of Agricultural Sciences – Sri Lanka / May 01, 2017
EFFECTS OF ADDITION OF DIFFERENT SPICES ON THE QUALITY ATTRIBUTES OF TIGER-NUT MILK (KUNUN-AYA) DURING STORAGE
Journal of microbiology, biotechnology and food sciences / Aug 01, 2017
INFLUENCE OF PARTIAL SUBSTITUTION OF SUGAR WITH SERENDIPITY BERRY (DIOSCOREOPHYLLUM CUMMINSII) EXTRACT ON THE QUALITY ATTRIBUTES AND SHELF-LIFE OF WHEAT BREAD
Journal of microbiology, biotechnology and food sciences / Aug 01, 2019
Monday Ojo Kayode, R., Adunni Abiodun, O., Adeyemi Akeem, S., & Omodasola Oyeneye, H. (2019). INFLUENCE OF PARTIAL SUBSTITUTION OF SUGAR WITH SERENDIPITY BERRY (DIOSCOREOPHYLLUM CUMMINSII) EXTRACT ON THE QUALITY ATTRIBUTES AND SHELF-LIFE OF WHEAT BREAD. Journal of Microbiology, Biotechnology and Food Sciences, 9(1), 115–120. https://doi.org/10.15414/jmbfs.2019.9.1.115-120
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Dr. Hannah Actor-Engel, Ph.D.
University of Colorado Anschutz
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8 total publications
NR2A- and NR2B-NMDA receptors and drebrin within postsynaptic spines of the hippocampus correlate with hunger-evoked exercise
Brain Structure and Function / Dec 03, 2016
Chen, Y.-W., Actor-Engel, H., Sherpa, A. D., Klingensmith, L., Chowdhury, T. G., & Aoki, C. (2016). NR2A- and NR2B-NMDA receptors and drebrin within postsynaptic spines of the hippocampus correlate with hunger-evoked exercise. Brain Structure and Function, 222(5), 2271–2294. https://doi.org/10.1007/s00429-016-1341-7
α4-GABAA receptors of hippocampal pyramidal neurons are associated with resilience against activity-based anorexia for adolescent female mice but not for males
Molecular and Cellular Neuroscience / Jul 01, 2018
Chen, Y.-W., Actor-Engel, H., & Aoki, C. (2018). α4-GABAA receptors of hippocampal pyramidal neurons are associated with resilience against activity-based anorexia for adolescent female mice but not for males. Molecular and Cellular Neuroscience, 90, 33–48. https://doi.org/10.1016/j.mcn.2018.04.008
Suppression of food restriction‐evoked hyperactivity in activity‐based anorexia animal model through glutamate transporters GLT‐1 at excitatory synapses in the hippocampus
Synapse / Mar 16, 2021
Bilash, O. M., Actor‐Engel, H. S., Sherpa, A. D., Chen, Y., & Aoki, C. (2021). Suppression of food restriction‐evoked hyperactivity in activity‐based anorexia animal model through glutamate transporters GLT‐1 at excitatory synapses in the hippocampus. Synapse, 75(7). Portico. https://doi.org/10.1002/syn.22197
Correction to: NR2A- and NR2B-NMDA receptors and drebrin within postsynaptic spines of the hippocampus correlate with hunger-evoked exercise
Brain Structure and Function / Jan 31, 2020
Chen, Y.-W., Actor-Engel, H., Sherpa, A. D., Klingensmith, L., Chowdhury, T. G., & Aoki, C. (2020). Correction to: NR2A- and NR2B-NMDA receptors and drebrin within postsynaptic spines of the hippocampus correlate with hunger-evoked exercise. Brain Structure and Function, 225(3), 1165–1165. https://doi.org/10.1007/s00429-020-02030-9
Acute reorganization of postsynaptic GABAA receptors reveals the functional impact of molecular nanoarchitecture at inhibitory synapses
Cell Reports / Nov 01, 2023
Olah, S. S., Kareemo, D. J., Buchta, W. C., Sinnen, B. L., Miller, C. N., Actor-Engel, H. S., Gookin, S. E., Winborn, C. S., Kleinjan, M. S., Crosby, K. C., Aoto, J., Smith, K. R., & Kennedy, M. J. (2023). Acute reorganization of postsynaptic GABAA receptors reveals the functional impact of molecular nanoarchitecture at inhibitory synapses. Cell Reports, 42(11), 113331. https://doi.org/10.1016/j.celrep.2023.113331
AMPA and GABAA receptor nanodomains assemble in the absence of synaptic neurotransmitter release
Frontiers in Molecular Neuroscience / Aug 03, 2023
Ramsay, H. J., Gookin, S. E., Ramsey, A. M., Kareemo, D. J., Crosby, K. C., Stich, D. G., Olah, S. S., Actor-Engel, H. S., Smith, K. R., & Kennedy, M. J. (2023). AMPA and GABAA receptor nanodomains assemble in the absence of synaptic neurotransmitter release. Frontiers in Molecular Neuroscience, 16. https://doi.org/10.3389/fnmol.2023.1232795
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Tali Reiner Brodetzki
Assistant Professor at La Salle University
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9 total publications
An integrative approach to untangling species delimitation in the Cataglyphis bicolor desert ant complex in Israel
Molecular Phylogenetics and Evolution / Oct 01, 2017
Eyer, P. A., Seltzer, R., Reiner-Brodetzki, T., & Hefetz, A. (2017). An integrative approach to untangling species delimitation in the Cataglyphis bicolor desert ant complex in Israel. Molecular Phylogenetics and Evolution, 115, 128–139. https://doi.org/10.1016/j.ympev.2017.07.024
Lack of subspecies-recognition in breeding Barn Swallows (Hirundo rustica transitiva)
Behavioural Processes / Aug 01, 2021
Reiner Brodetzki, T., Lotem, A., Safran, R. J., & Hauber, M. E. (2021). Lack of subspecies-recognition in breeding Barn Swallows (Hirundo rustica transitiva). Behavioural Processes, 189, 104422. https://doi.org/10.1016/j.beproc.2021.104422
Worker demography and behavior in a supercolonial ant colony: The case of the desert ant Cataglyphis niger
Ethology / Oct 09, 2019
Reiner Brodetzki, T., Brodetzki, G., Feinerman, O., & Hefetz, A. (2019). Worker demography and behavior in a supercolonial ant colony: The case of the desert ant Cataglyphis niger. Ethology, 126(1), 59–67. Portico. https://doi.org/10.1111/eth.12960
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Martin Tsui
University of California, San Francisco
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16 total publications
Comparative host–pathogen protein–protein interaction analysis of recent coronavirus outbreaks and important host targets identification
Briefings in Bioinformatics / Sep 11, 2020
Khan, A. A., & Khan, Z. (2020). Comparative host–pathogen protein–protein interaction analysis of recent coronavirus outbreaks and important host targets identification. Briefings in Bioinformatics, 22(2), 1206–1214. https://doi.org/10.1093/bib/bbaa207
Structure Principles of CRISPR-Cas Surveillance and Effector Complexes
Annual Review of Biophysics / Jun 22, 2015
Tsui, T. K. M., & Li, H. (2015). Structure Principles of CRISPR-Cas Surveillance and Effector Complexes. Annual Review of Biophysics, 44(1), 229–255. https://doi.org/10.1146/annurev-biophys-060414-033939
Computational pipeline provides mechanistic understanding of Omicron variant of concern neutralizing engineered ACE2 receptor traps
Structure / Mar 01, 2023
Remesh, S. G., Merz, G. E., Brilot, A. F., Chio, U. S., Rizo, A. N., Pospiech, T. H., Lui, I., Laurie, M. T., Glasgow, J., Le, C. Q., Zhang, Y., Diwanji, D., Hernandez, E., Lopez, J., Mehmood, H., Pawar, K. I., Pourmal, S., Smith, A. M., Zhou, F., … Verba, K. A. (2023). Computational pipeline provides mechanistic understanding of Omicron variant of concern neutralizing engineered ACE2 receptor traps. Structure, 31(3), 253-264.e6. https://doi.org/10.1016/j.str.2023.01.009
Bi-paratopic and multivalent VH domains block ACE2 binding and neutralize SARS-CoV-2
Nature Chemical Biology / Oct 20, 2020
Bracken, C. J., Lim, S. A., Solomon, P., Rettko, N. J., Nguyen, D. P., Zha, B. S., Schaefer, K., Byrnes, J. R., Zhou, J., Lui, I., Liu, J., Pance, K., Azumaya, C. M., Braxton, J. R., Brilot, A. F., Gupta, M., Li, F., Lopez, K. E., … Melo, A. (2020). Bi-paratopic and multivalent VH domains block ACE2 binding and neutralize SARS-CoV-2. Nature Chemical Biology, 17(1), 113–121. https://doi.org/10.1038/s41589-020-00679-1
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Xiaolei Wang
R&D Scientist in biomedical imaging and surgical microscope development
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33 total publications
Computational multifocal microscopy
Biomedical Optics Express / Nov 28, 2018
He, K., Wang, Z., Huang, X., Wang, X., Yoo, S., Ruiz, P., Gdor, I., Selewa, A., Ferrier, N. J., Scherer, N., Hereld, M., Katsaggelos, A. K., & Cossairt, O. (2018). Computational multifocal microscopy. Biomedical Optics Express, 9(12), 6477. https://doi.org/10.1364/boe.9.006477
DeepProjection: specific and robust projection of curved 2D tissue sheets from 3D microscopy using deep learning
Development / Nov 01, 2022
Haertter, D., Wang, X., Fogerson, S. M., Ramkumar, N., Crawford, J. M., Poss, K. D., Di Talia, S., Kiehart, D. P., & Schmidt, C. F. (2022). DeepProjection: specific and robust projection of curved 2D tissue sheets from 3D microscopy using deep learning. Development, 149(21). https://doi.org/10.1242/dev.200621
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Odion Ikhimiukor
Postdoctoral Research Scientist at University at Albany, State University of New York
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27 total publications
A bottom-up view of antimicrobial resistance transmission in developing countries
Nature Microbiology / May 30, 2022
Ikhimiukor, O. O., Odih, E. E., Donado-Godoy, P., & Okeke, I. N. (2022). A bottom-up view of antimicrobial resistance transmission in developing countries. Nature Microbiology, 7(6), 757–765. https://doi.org/10.1038/s41564-022-01124-w
A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex
Nature Communications / Jul 07, 2021
Lam, M. M. C., Wick, R. R., Watts, S. C., Cerdeira, L. T., Wyres, K. L., & Holt, K. E. (2021). A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex. Nature Communications, 12(1). https://doi.org/10.1038/s41467-021-24448-3
Evolutionary dynamics of the accessory genomes of Staphylococcus aureus
mSphere / Mar 19, 2024
Piper, K. R., Ikhimiukor, O. O., Souza, S. S. R., Garcia-Aroca, T., & Andam, C. P. (2024). Evolutionary dynamics of the accessory genomes of Staphylococcus aureus. MSphere. https://doi.org/10.1128/msphere.00751-23
Phylogenetic lineages and antimicrobial resistance determinants of clinical Klebsiella oxytoca spanning local to global scales
Microbiology Spectrum / Oct 17, 2023
Ikhimiukor, O. O., Souza, S. S. R., Akintayo, I. J., Marcovici, M. M., Workman, A., Martin, I. W., & Andam, C. P. (2023). Phylogenetic lineages and antimicrobial resistance determinants of clinical Klebsiella oxytoca spanning local to global scales. Microbiology Spectrum, 11(5). https://doi.org/10.1128/spectrum.00549-23
Leaky barriers to gene sharing between locally co-existing coagulase-negative Staphylococcus species
Communications Biology / May 03, 2023
Ikhimiukor, O. O., Souza, S. S. R., Marcovici, M. M., Nye, G. J., Gibson, R., & Andam, C. P. (2023). Leaky barriers to gene sharing between locally co-existing coagulase-negative Staphylococcus species. Communications Biology, 6(1). https://doi.org/10.1038/s42003-023-04877-0
Genome Sequencing of Methicillin-Resistant and Methicillin-Susceptible Mammaliicoccus sciuri from Diseased Animals
Microbiology Resource Announcements / Oct 20, 2022
Garcia-Aroca, T., Souza, S. S. R., Ikhimiukor, O. O., Marcovici, M. M., Smith, J. T., Amador, S., McGonagle, C. J., Nye, G. J., Needle, D. B., Gibson, R., & Andam, C. P. (2022). Genome Sequencing of Methicillin-Resistant and Methicillin-Susceptible Mammaliicoccus sciuri from Diseased Animals. Microbiology Resource Announcements, 11(10). https://doi.org/10.1128/mra.00714-22
Establishing a national reference laboratory for antimicrobial resistance using a whole-genome sequencing framework: Nigeria’s experience
Microbiology / Sep 22, 2022
Okeke, I. N., Aboderin, A. O., Egwuenu, A., Underwood, A., Afolayan, A. O., Kekre, M., Oaikhena, A. O., Odih, E. E., Omotayo, H. T., Dada-Adegbola, H., Ogunleye, V. O., Ikhimiukor, O. O., Aanensen, D. M., & Ihekweazu, C. (2022). Establishing a national reference laboratory for antimicrobial resistance using a whole-genome sequencing framework: Nigeria’s experience. Microbiology, 168(8). https://doi.org/10.1099/mic.0.001208
Draft Genome Sequences of Multidrug-Resistant Shiga Toxin-Producing Escherichia coli O116:H25 Strains from Ready-to-Eat Foods Sold in Lagos, Nigeria
Microbiology Resource Announcements / Aug 18, 2022
Makinde, O. M., Van Wyk, D., Ikhimiukor, O. O., Bezuidenhout, C., Adeleke, R. A., & Ezekiel, C. N. (2022). Draft Genome Sequences of Multidrug-Resistant Shiga Toxin-Producing Escherichia coli O116:H25 Strains from Ready-to-Eat Foods Sold in Lagos, Nigeria. Microbiology Resource Announcements, 11(8). https://doi.org/10.1128/mra.00314-22
Genetic variation and cryptic lineage diversity of the Nigerian red-headed rock agama Agama agama associate with eco-geographic zones
Current Zoology / Mar 08, 2019
Nneji, L. M., Adeola, A. C., Yan, F., Okeyoyin, A. O., Oladipo, O. C., Saidu, Y., Samuel, D., Nneji, I. C., Adeyi, A. O., Onadeko, A. B., Olagunju, T. E., Omotoso, O., Oladipo, S. O., Iyiola, O. A., Usongo, J. Y., Auta, T., Usman, A. D., Abdullahi, H., Ikhimiukor, O. O., … Che, J. (2019). Genetic variation and cryptic lineage diversity of the Nigerian red-headed rock agama Agama agama associate with eco-geographic zones. Current Zoology, 65(6), 713–724. https://doi.org/10.1093/cz/zoz002
Selective metal accumulation by metal-resistant bacteria growing on spent engine oil in single and ternary metal mixtures
International Journal of Environmental Science and Technology / Dec 08, 2018
Ikhimiukor, O. O., & Adelowo, O. O. (2018). Selective metal accumulation by metal-resistant bacteria growing on spent engine oil in single and ternary metal mixtures. International Journal of Environmental Science and Technology, 16(8), 4945–4954. https://doi.org/10.1007/s13762-018-2137-5
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Boris Leibovitch
Experienced wet lab and in teaching Molecular Cell biologist, geneticist, cancer biologist in Academia
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22 total publications
Adipocyte derived paracrine mediators of mammary ductal morphogenesis controlled by retinoic acid receptors
Developmental Biology / Jan 01, 2011
Marzan, C. V., Kupumbati, T. S., Bertran, S. P., Samuels, T., Leibovitch, B., Mira-y-Lopez, R., Ossowski, L., & Farias, E. F. (2011). Adipocyte derived paracrine mediators of mammary ductal morphogenesis controlled by retinoic acid receptors. Developmental Biology, 349(2), 125–136. https://doi.org/10.1016/j.ydbio.2010.10.018
The MMSET protein is a histone methyltransferase with characteristics of a transcriptional corepressor
Blood / Mar 15, 2008
Marango, J., Shimoyama, M., Nishio, H., Meyer, J. A., Min, D.-J., Sirulnik, A., Martinez-Martinez, Y., Chesi, M., Bergsagel, P. L., Zhou, M.-M., Waxman, S., Leibovitch, B. A., Walsh, M. J., & Licht, J. D. (2008). The MMSET protein is a histone methyltransferase with characteristics of a transcriptional corepressor. Blood, 111(6), 3145–3154. https://doi.org/10.1182/blood-2007-06-092122
Analyzing Heterochromatin Formation Using Chromosome 4 of Drosophila melanogaster
Cold Spring Harbor Symposia on Quantitative Biology / Jan 01, 2004
HAYNES, K. A., LEIBOVITCH, B. A., RANGWALA, S. H., CRAIG, C., & ELGIN, S. C. R. (2004). Analyzing Heterochromatin Formation Using Chromosome 4 of Drosophila melanogaster. Cold Spring Harbor Symposia on Quantitative Biology, 69(0), 267–272. https://doi.org/10.1101/sqb.2004.69.267
GAGA Factor and the TFIID Complex Collaborate in Generating an Open Chromatin Structure at the Drosophila melanogaster hsp26 Promoter
Molecular and Cellular Biology / Sep 01, 2002
Leibovitch, B. A., Lu, Q., Benjamin, L. R., Liu, Y., Gilmour, D. S., & Elgin, S. C. R. (2002). GAGA Factor and the TFIID Complex Collaborate in Generating an Open Chromatin Structure at the Drosophila melanogaster hsp26 Promoter. Molecular and Cellular Biology, 22(17), 6148–6157. https://doi.org/10.1128/mcb.22.17.6148-6157.2002
A heat-shock-activated cDNA encoding GAGA factor rescues some lethal mutations in the Drosophila melanogaster Trithorax-like gene
Genetical Research / Aug 01, 2001
GRANOK, H., LEIBOVITCH, B. A., & ELGIN, S. C. R. (2001). A heat-shock-activated cDNA encoding GAGA factor rescues some lethal mutations in the Drosophila melanogaster Trithorax-like gene. Genetical Research, 78(1), 13–21. https://doi.org/10.1017/s0016672301005122
Chromatin organization and transcriptional control of gene expression in Drosophila
Gene / Aug 01, 2000
Farkas, G., Leibovitch, B. A., & Elgin, S. C. R. (2000). Chromatin organization and transcriptional control of gene expression in Drosophila. Gene, 253(2), 117–136. https://doi.org/10.1016/s0378-1119(00)00240-7
Chromatin: Ga-ga over GAGA factor
Current Biology / Mar 01, 1995
Granok, H., Leibovitch, B. A., Shaffer, C. D., & Elgin, S. C. R. (1995). Chromatin: Ga-ga over GAGA factor. Current Biology, 5(3), 238–241. https://doi.org/10.1016/s0960-9822(95)00048-0
Mutations That Affect Ion Channels Change the Sensitivity ofDrosophila Melanogasterto Volatile Anesthetics
Journal of Neurogenetics / Jan 01, 1995
Leibovitch, B. A., Campbell, D. B., Krishnan, K. S., & Nash, H. A. (1995). Mutations That Affect Ion Channels Change the Sensitivity ofDrosophila Melanogasterto Volatile Anesthetics. Journal of Neurogenetics, 10(1), 1–13. https://doi.org/10.3109/01677069509083455
Telomeres and P-element of Drosophila melanogaster contain sequences that replicate autonomously in Saccharomyces cerevisiae
Molecular and General Genetics MGG / Nov 01, 1984
Danilevskaya, O. N., Kurenova, E. V., Leibovitch, B. A., Shevelev, A. Ya., Bass, I. A., & Khesin, R. B. (1984). Telomeres and P-element of Drosophila melanogaster contain sequences that replicate autonomously in Saccharomyces cerevisiae. Molecular and General Genetics MGG, 197(2), 342–344. https://doi.org/10.1007/bf00330983
Increase in the number of histone genes in case of their deficiency in Drosophila melanogaster
Molecular and General Genetics MGG / Jul 01, 1980
Chernyshev, A. I., Bashkirov, V. N., Leibovitch, B. A., & Khesin, R. B. (1980). Increase in the number of histone genes in case of their deficiency in Drosophila melanogaster. Molecular and General Genetics MGG, 178(3), 663–668. https://doi.org/10.1007/bf00337876
Influence of deficiency of the histone gene-containing 38B-40 region on X-chromosome template activity and the White gene position effect variegation in Drosophila melanogaster
Molecular and General Genetics MGG / Jan 01, 1978
Khesin, R. B., & Leibovitch, B. A. (1978). Influence of deficiency of the histone gene-containing 38B-40 region on X-chromosome template activity and the White gene position effect variegation in Drosophila melanogaster. Molecular and General Genetics MGG, 162(3), 323–328. https://doi.org/10.1007/bf00268858
Comparison of in vivo and in vitro RNA synthesis on polytene chromosomes of Drosophila
Chromosoma / Jan 01, 1976
Leibovitch, B. A., Belyaeva, E. S., Zhimulev, I. F., & Khesin, R. B. (1976). Comparison of in vivo and in vitro RNA synthesis on polytene chromosomes of Drosophila. Chromosoma, 54(4), 349–362. https://doi.org/10.1007/bf00292815
Synthesis of RNA by Escherichia coli RNA polymerase on the chromosomes of Drosophila melanogaster
Chromosoma / Jan 01, 1974
Khesin, R. B., & Leibovitch, B. A. (1974). Synthesis of RNA by Escherichia coli RNA polymerase on the chromosomes of Drosophila melanogaster. Chromosoma, 46(2), 161–172. https://doi.org/10.1007/bf00332514
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Luca Delfinis
PhD candidate in physiology researching the mechanisms that drive muscle dysfunction in cancer
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4 total publications
Early myopathy in Duchenne muscular dystrophy is associated with elevated mitochondrial H 2 O 2 emission during impaired oxidative phosphorylation
Journal of Cachexia, Sarcopenia and Muscle / Apr 02, 2019
Hughes, M. C., Ramos, S. V., Turnbull, P. C., Rebalka, I. A., Cao, A., Monaco, C. M. F., Varah, N. E., Edgett, B. A., Huber, J. S., Tadi, P., Delfinis, L. J., Schlattner, U., Simpson, J. A., Hawke, T. J., & Perry, C. G. R. (2019). Early myopathy in Duchenne muscular dystrophy is associated with elevated mitochondrial H 2 O 2 emission during impaired oxidative phosphorylation. Journal of Cachexia, Sarcopenia and Muscle, 10(3), 643–661. Portico. https://doi.org/10.1002/jcsm.12405
Mitochondrial creatine sensitivity is lost in the D2.mdx model of Duchenne muscular dystrophy and rescued by the mitochondrial-enhancing compound Olesoxime
American Journal of Physiology-Cell Physiology / May 01, 2023
Bellissimo, C. A., Delfinis, L. J., Hughes, M. C., Turnbull, P. C., Gandhi, S., DiBenedetto, S. N., Rahman, F. A., Tadi, P., Amaral, C. A., Dehghani, A., Cobley, J. N., Quadrilatero, J., Schlattner, U., & Perry, C. G. R. (2023). Mitochondrial creatine sensitivity is lost in the D2.mdx model of Duchenne muscular dystrophy and rescued by the mitochondrial-enhancing compound Olesoxime. American Journal of Physiology-Cell Physiology, 324(5), C1141–C1157. https://doi.org/10.1152/ajpcell.00377.2022
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